| Previous changeset 0:6d3560a3a548 (2018-01-25) Next changeset 2:e70198847b2a (2018-01-25) |
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Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/flashlfq commit a9220a40d89c0bd250002d876d4b2f751d19f3de |
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modified:
flashlfq.xml |
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| diff -r 6d3560a3a548 -r 1e2fc34b1f20 flashlfq.xml --- a/flashlfq.xml Thu Jan 25 16:10:58 2018 -0500 +++ b/flashlfq.xml Thu Jan 25 18:02:19 2018 -0500 |
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| @@ -7,14 +7,15 @@ #import re #set $idt_path = $re.sub('\s','_',$re.sub('[.][^.]*$','',$idt.display_name.split('/')[-1])) + ".psmtsv" ln -s '${idt}' '${idt_path}' && + mkdir spectrum_dir && #for $peak_list in $peak_lists: #set $input_name = $re.sub('[.][^.]*$','',$peak_list.display_name.split('/')[-1]) + ".mzML" - ln -s '${peak_list}' '${input_name}' && + ln -s '${peak_list}' 'spectrum_dir/${input_name}' && #end for FlashLFQ --idt '$idt_path' - --rep `pwd` + --rep spectrum_dir --ppm $ppm --iso $iso --nis $nis |