| Previous changeset 35:de0f7e0a3896 (2024-03-07) Next changeset 37:ba931a59dd59 (2024-04-04) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit cb858cbf5d9e307b663105f674f1acaa4f90a1fb |
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modified:
fasterq_dump.xml |
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| diff -r de0f7e0a3896 -r 1ec814014652 fasterq_dump.xml --- a/fasterq_dump.xml Thu Mar 07 07:22:00 2024 +0000 +++ b/fasterq_dump.xml Thu Mar 14 15:21:59 2024 +0000 |
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| @@ -2,6 +2,7 @@ <description>format from NCBI SRA</description> <macros> <import>macros.xml</import> + <token name="VERSION_SUFFIX">1</token> </macros> <expand macro="edam_ontology"/> <expand macro="bio_tools"/> @@ -13,7 +14,9 @@ @CONFIGURE_RETRY@ @SET_ACCESSIONS@ while [ \$SRA_PREFETCH_ATTEMPT -le \$SRA_PREFETCH_RETRIES ] ; do - fasterq-dump "\$acc" -e \${GALAXY_SLOTS:-1} + fasterq-dump "\$acc" + -e \${GALAXY_SLOTS:-1} + -t \${TMPDIR} --seq-defline '$adv.seq_defline' --qual-defline '+' $adv.split |