| Previous changeset 5:c54d31467be4 (2013-11-29) Next changeset 7:d63afb3521e7 (2013-12-04) |
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Commit message:
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modified:
tool_dependencies.xml |
| b |
| diff -r c54d31467be4 -r 1ee0b1ecf500 tool_dependencies.xml --- a/tool_dependencies.xml Fri Nov 29 08:59:04 2013 -0500 +++ b/tool_dependencies.xml Mon Dec 02 07:49:06 2013 -0500 |
| b |
| @@ -57,20 +57,19 @@ <package name="deepTools" version="1.5.1_323fa6bf083c9d40e5092a6364a4ab8fee57507a"> <install version="1.0"> <actions> + <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> <!-- populate the environment variables from the dependend repos --> <action type="set_environment_for_install"> <repository changeset_revision="b62538c8c664" name="package_pysam_0_7_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> <package name="pysam" version="0.7.7" /> </repository> </action> - <action type="shell_command">git clone --recursive https://github.com/fidelram/deepTools.git</action> <action type="shell_command">git reset --hard 323fa6bf083c9d40e5092a6364a4ab8fee57507a</action> <action type="make_directory">$INSTALL_DIR/lib/python</action> <action type="shell_command"> export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin </action> - <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |