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tool-data/bwa_index.loc.sample |
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| diff -r 02c0b9b2cc02 -r 1f1b6c9b09f1 tool-data/bwa_index.loc.sample --- a/tool-data/bwa_index.loc.sample Thu Oct 12 10:20:42 2017 -0400 +++ b/tool-data/bwa_index.loc.sample Thu Oct 12 10:23:53 2017 -0400 |
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octicon-x" height="16" version="1.1" viewBox="0 0 12 16" width="12"><path fill-rule="evenodd" d="M7.48 8l3.75 3.75-1.48 1.48L6 9.48l-3.75 3.75-1.48-1.48L4.52 8 .77 4.25l1.48-1.48L6 6.52l3.75-3.75 1.48 1.48z"/></svg>\n- </button>\n- </div>\n-</div>\n-\n-\n- </body>\n-</html>\n-\n+#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 phiX.fa.amb\n+#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 phiX.fa.ann\n+#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 phiX.fa.bwt\n+#...etc...\n+#\n+#Your bwa_index.loc file should include an entry per line for each\n+#index set you have stored. The "file" in the path does not actually\n+#exist, but it is the prefix for the actual index files. For example:\n+#\n+#phiX174 phiX phiX174 /depot/data2/galaxy/phiX/base/phiX.fa\n+#hg18canon hg18 hg18 Canonical /depot/data2/galaxy/hg18/base/hg18canon.fa\n+#hg18full hg18 hg18 Full /depot/data2/galaxy/hg18/base/hg18full.fa\n+#/orig/path/hg19.fa hg19 hg19 /depot/data2/galaxy/hg19/base/hg19.fa\n+#...etc...\n\\ No newline at end of file\n' |