| Previous changeset 1:3a4694d4354f (2019-03-20) Next changeset 3:62aebaf6cfa0 (2019-05-10) |
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Commit message:
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/concat_multi_datasets commit 9f8e7a0dfea7761d71b9f2963f4686b4e892c2cf |
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modified:
catWrapper.xml |
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| diff -r 3a4694d4354f -r 1fe4d165ac0e catWrapper.xml --- a/catWrapper.xml Wed Mar 20 07:17:16 2019 -0400 +++ b/catWrapper.xml Mon Apr 15 18:52:43 2019 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="cat_multi_datasets" name="Concatenate multiple datasets" version="1.0"> +<tool id="cat_multi_datasets" name="Concatenate multiple datasets" version="1.1.0"> <description>tail-to-head by specifying how</description> <command><![CDATA[ #if $headers == 0: @@ -56,22 +56,22 @@ #for $file in $global_condition.inputs.keys() $concat_command $global_condition.inputs[$file]['forward'] - > concatenated/'${file}.${global_condition.inputs[$file]['reverse'].ext}.listed' && + > concatenated/'${file}.listed.${global_condition.inputs[$file]['reverse'].ext}.listed' && $concat_command $global_condition.inputs[$file]['reverse'] - >> concatenated/'${file}.${global_condition.inputs[$file]['reverse'].ext}.listed' && + >> concatenated/'${file}.listed.${global_condition.inputs[$file]['reverse'].ext}.listed' && #end for sleep 1 #else: #for $file in $global_condition.inputs.keys() - printf "# ${file}_forward\n" > concatenated/'${file}.${global_condition.inputs[$file]['reverse'].ext}.listed' && + printf "# ${file}_forward\n" > concatenated/'${file}.listed.${global_condition.inputs[$file]['reverse'].ext}.listed' && $concat_command $global_condition.inputs[$file]['forward'] - >> concatenated/'${file}.${global_condition.inputs[$file]['reverse'].ext}.listed' && - printf "# ${file}_reverse\n" >> concatenated/'${file}.${global_condition.inputs[$file]['reverse'].ext}.listed' && + >> concatenated/'${file}.listed.${global_condition.inputs[$file]['reverse'].ext}.listed' && + printf "# ${file}_reverse\n" >> concatenated/'${file}.listed.${global_condition.inputs[$file]['reverse'].ext}.listed' && $concat_command $global_condition.inputs[$file]['reverse'] - >> concatenated/'${file}.${global_condition.inputs[$file]['reverse'].ext}.listed' && + >> concatenated/'${file}.listed.${global_condition.inputs[$file]['reverse'].ext}.listed' && #end for sleep 1 #end if @@ -134,7 +134,7 @@ <filter>global_condition['input_type'] == 'paired_collection' and global_condition['paired_cat_type'] == 'by_strand'</filter> </collection> <collection name="list_output" type="list" label="Concatenation by pairs"> - <discover_datasets pattern="(?P<name>.*)\.(?P<ext>[^\._]+\.?[^\._])\.listed" visible="false" directory="concatenated"/> + <discover_datasets pattern="(?P<name>.*)\.listed\.(?P<ext>.*)\.listed" visible="false" directory="concatenated"/> <filter>global_condition['input_type'] == 'paired_collection' and global_condition['paired_cat_type'] == 'by_pair'</filter> </collection> </outputs> |