| Previous changeset 0:d70139524747 (2023-11-10) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sceasy/ commit 49fa5e842137b98ceb314ab1471411785a352bd3 |
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modified:
sceasy.xml |
| b |
| diff -r d70139524747 -r 2062be7efc84 sceasy.xml --- a/sceasy.xml Fri Nov 10 20:24:21 2023 +0000 +++ b/sceasy.xml Tue Dec 12 11:40:19 2023 +0000 |
| [ |
| @@ -4,7 +4,7 @@ </description> <macros> <token name="@TOOL_VERSION@">0.0.7</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <macro name="mac_input_form" token_format="@FORMAT@" > <param name="input_object_file" type="data" format="@FORMAT@" label="Input object in @FORMAT@ format"/> </macro> @@ -110,28 +110,28 @@ <option value="seurat2sce" >Seurat to SingleCellexperiment</option> </param> <when value="anndata2cds" > - <expand macro="mac_input_form" token_format="h5ad" /> + <expand macro="mac_input_form" format="h5ad,h5" /> </when> <when value="anndata2seurat" > - <expand macro="mac_input_form" token_format="h5ad" /> + <expand macro="mac_input_form" format="h5ad,h5" /> </when> <when value="loom2anndata"> - <expand macro="mac_input_form" token_format="h5" /> + <expand macro="mac_input_form" format="h5,loom,rdata" /> </when> <when value="loom2sce"> - <expand macro="mac_input_form" token_format="h5" /> + <expand macro="mac_input_form" format="h5,loom,rdata" /> </when> <when value="sce2anndata"> - <expand macro="mac_input_form" token_format="sce" /> + <expand macro="mac_input_form" format="sce,rds,rdata.sce" /> </when> <when value="sce2loom"> - <expand macro="mac_input_form" token_format="sce" /> + <expand macro="mac_input_form" format="sce,rds,rdata.sce" /> </when> <when value="seurat2anndata"> - <expand macro="mac_input_form" token_format="rds" /> + <expand macro="mac_input_form" format="rds,rdata" /> </when> <when value="seurat2sce"> - <expand macro="mac_input_form" token_format="rds" /> + <expand macro="mac_input_form" format="rds,rdata" /> </when> </conditional> </inputs> @@ -151,7 +151,7 @@ conversion['direction'].endswith('loom') </filter> </data> - <data name="output_anndata" format="h5" from_work_dir="outfile.h5ad" label="${tool.name} on ${on_string}: AnnData"> + <data name="output_anndata" format="h5ad" from_work_dir="outfile.h5ad" label="${tool.name} on ${on_string}: AnnData"> <filter> conversion['direction'].endswith('anndata') </filter> @@ -176,7 +176,7 @@ <test expect_num_outputs="1"> <param name="direction" value="loom2anndata"/> <param name="input_object_file" value="sce2loom.rds"/> - <output name="output_anndata" file="loom2anndata.h5ad" ftype="h5" compare="sim_size"/> + <output name="output_anndata" file="loom2anndata.h5ad" ftype="h5ad" compare="sim_size"/> </test> <test expect_num_outputs="1"> <param name="direction" value="loom2sce"/> @@ -186,7 +186,7 @@ <test expect_num_outputs="1"> <param name="direction" value="sce2anndata"/> <param name="input_object_file" value="test_sce.rds"/> - <output name="output_anndata" file="sce2anndata.h5ad" ftype="h5" compare="sim_size"/> + <output name="output_anndata" file="sce2anndata.h5ad" ftype="h5ad" compare="sim_size"/> </test> <test expect_num_outputs="1"> <param name="direction" value="sce2loom"/> @@ -196,7 +196,7 @@ <test expect_num_outputs="1"> <param name="direction" value="seurat2anndata"/> <param name="input_object_file" value="test_seurat.rds"/> - <output name="output_seurat" file="test_anndata.h5ad" ftype="h5" compare="sim_size"/> + <output name="output_anndata" file="test_anndata.h5ad" ftype="h5ad" compare="sim_size"/> </test> <test expect_num_outputs="1"> <param name="direction" value="seurat2sce"/> @@ -204,7 +204,7 @@ <output name="output_sce" file="test_sce.rds" ftype="rdata" compare="sim_size"/> </test> </tests> - <help> + <help><![CDATA[ SCeasy ====== @@ -217,7 +217,7 @@ :align: center - </help> + ]]></help> <citations> <citation type="doi"> doi:10.1093/nargab/lqaa052</citation> </citations> |