| Previous changeset 1:60ed1c94f584 (2020-03-27) Next changeset 3:0243407479f1 (2020-03-31) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kc-align commit 03afe9e2a97f86f13041214639112a80e9765a71" |
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modified:
kc-align.xml test-data/kc-align.fasta |
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| diff -r 60ed1c94f584 -r 20bef04b5272 kc-align.xml --- a/kc-align.xml Fri Mar 27 15:00:09 2020 -0400 +++ b/kc-align.xml Mon Mar 30 10:01:40 2020 -0400 |
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| @@ -1,6 +1,6 @@ -<tool id="kc-align" name="Kc-Align" version="0.1.2" python_template_version="3.5"> +<tool id="kc-align" name="Kc-Align" version="0.1.3" python_template_version="3.5"> <requirements> - <requirement type="package" version="0.5.8">kcalign</requirement> + <requirement type="package" version="0.5.9">kcalign</requirement> <requirement type="package" version="3.2.2">kalign3</requirement> </requirements> <command detect_errors="exit_code"> @@ -13,6 +13,7 @@ --start $position.start --end $position.end #end if + $compress ]]></command> <inputs> <param name="reference" type="data" format="fasta" label="Reference Sequence" help="Single FASTA reference sequence to be aligned" /> @@ -33,6 +34,7 @@ <when value="mixed" > </when> </conditional> + <param name="compress" type="boolean" truevalue="--compress" falsevalue="" label="Compress" help="Compress identical sequences" /> </inputs> <outputs> <data name="fasta" format="fasta" from_work_dir="codon_align.fasta" label="${outname}.fasta" /> |
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| diff -r 60ed1c94f584 -r 20bef04b5272 test-data/kc-align.fasta --- a/test-data/kc-align.fasta Fri Mar 27 15:00:09 2020 -0400 +++ b/test-data/kc-align.fasta Mon Mar 30 10:01:40 2020 -0400 |
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| @@ -1,4 +1,4 @@ ->NC_045512.2 +>NC_045512.2 Wuhan seafood market pneumonia virus isolate Wuhan-Hu-1, complete genome ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAATCTTACAACC AGAACTCAATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTGAC AAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGACTTGTTCTTACCTTTCTTTTCC @@ -63,7 +63,7 @@ ATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGCTTTGCTGTATGACCAGTTGC TGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATTTGATGAAGACGAC TCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACA ->MT019531.1 +>MT019531.1 Severe acute respiratory syndrome coronavirus 2 isolate BetaCoV/Wuhan/IPBCAMS-WH-03/2019, complete genome ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAATCTTACAACC AGAACTCAATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTGAC AAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGACTTGTTCTTACCTTTCTTTTCC @@ -128,7 +128,7 @@ ATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGCTTTGCTGTATGACCAGTTGC TGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATTTGATGAAGACGAC TCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACA ->MN996528.1 +>MN996528.1 Severe acute respiratory syndrome coronavirus 2 isolate WIV04, complete genome ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAATCTTACAACC AGAACTCAATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTGAC AAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGACTTGTTCTTACCTTTCTTTTCC @@ -193,7 +193,7 @@ ATAGCTGGCTTGATTGCCATAGTAATGGTGACAATTATGCTTTGCTGTATGACCAGTTGC TGTAGTTGTCTCAAGGGCTGTTGTTCTTGTGGATCCTGCTGCAAATTTGATGAAGACGAC TCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACA ->MT019532.1 +>MT019532.1 Severe acute respiratory syndrome coronavirus 2 isolate BetaCoV/Wuhan/IPBCAMS-WH-04/2019, complete genome ATGTTTGTTTTTCTTGTTTTATTGCCACTAGTCTCTAGTCAGTGTGTTAATCTTACAACC AGAACTCAATTACCCCCTGCATACACTAATTCTTTCACACGTGGTGTTTATTACCCTGAC AAAGTTTTCAGATCCTCAGTTTTACATTCAACTCAGGACTTGTTCTTACCTTTCTTTTCC |