| Previous changeset 47:b68434e4db0e (2017-08-08) Next changeset 49:bd3036f7baf4 (2017-08-10) |
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Commit message:
Uploaded |
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added:
GRsetFromGEO/test-data/GRsetFromGEO.xml |
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| diff -r b68434e4db0e -r 20d50c006fca GRsetFromGEO/test-data/GRsetFromGEO.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GRsetFromGEO/test-data/GRsetFromGEO.xml Thu Aug 10 06:16:48 2017 -0400 |
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| @@ -0,0 +1,24 @@ +<tool id="getGRset" name="GRsetFromGEO"> + <description>downloads data from GEO</description> + <requirements> +<requirement type="package" version="1.20.0">bioconductor-minfi</requirement> + </requirements> + <stdio> + <exit_code range="1:" /> + </stdio> + <command>Rscript $__tool_directory__/GRsetFromGEO.R "$input" "$output"</command> + <inputs> + <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> + </inputs> + <outputs> + <data format="rdata" name="output" label="output.rdata" /> + </outputs> + <help> + **What it does** + This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object + **Input** + The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'" + **Output** + GenomicRatioSet object + </help> +</tool> |