| Previous changeset 4:6b5a5842531e (2022-02-21) Next changeset 6:4a01e0d2892c (2022-08-10) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit a09a5e3ee3c76550526f082b97de8da75181a1dd |
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modified:
macros.xml metaplasmidspades.xml write_tsv_script.py |
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| diff -r 6b5a5842531e -r 21da31ed41a1 macros.xml --- a/macros.xml Mon Feb 21 10:23:09 2022 +0000 +++ b/macros.xml Wed Jul 13 07:43:38 2022 +0000 |
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| @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">3.15.4</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">spades</requirement> |
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| diff -r 6b5a5842531e -r 21da31ed41a1 metaplasmidspades.xml --- a/metaplasmidspades.xml Mon Feb 21 10:23:09 2022 +0000 +++ b/metaplasmidspades.xml Wed Jul 13 07:43:38 2022 +0000 |
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| @@ -120,8 +120,9 @@ </output> <output name="out_cs"> <assert_contents> - <has_n_lines n="1"/> + <has_n_lines n="2"/> <has_text_matching expression="#name	length	coverage"/> + <has_text_matching expression="NODE_1	9645	13.774865_cutoff_0_type_circular"/> </assert_contents> </output> <output_collection name="out_cr" type="list" count="3"> @@ -149,8 +150,9 @@ </output> <output name="out_ss"> <assert_contents> - <has_n_lines n="1"/> + <has_n_lines n="2"/> <has_text_matching expression="#name	length	coverage"/> + <has_text_matching expression="NODE_1	9645	13.774865_cutoff_0_type_circula"/> </assert_contents> </output> <output name="out_l"> |
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| diff -r 6b5a5842531e -r 21da31ed41a1 write_tsv_script.py --- a/write_tsv_script.py Mon Feb 21 10:23:09 2022 +0000 +++ b/write_tsv_script.py Wed Jul 13 07:43:38 2022 +0000 |
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| @@ -3,7 +3,7 @@ import re import sys -search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*).*\$" +search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*)(.*\$)?" replace_str = r"\1_\2\t\3\t\4" |