| Previous changeset 28:c1bf6f112a19 (2017-03-20) Next changeset 30:0f52e287968e (2017-06-15) |
|
Commit message:
Uploaded |
|
modified:
getGSMdata/getGSMdata.xml |
|
removed:
getGSMdata/test-data/._.DS_Store getGSMdata/tool_dependencies.xml |
| b |
| diff -r c1bf6f112a19 -r 225b0a8f9f3e getGSMdata/getGSMdata.xml --- a/getGSMdata/getGSMdata.xml Mon Mar 20 06:58:17 2017 -0400 +++ b/getGSMdata/getGSMdata.xml Thu Jun 15 06:27:44 2017 -0400 |
| b |
| @@ -1,9 +1,6 @@ <tool id="GSM" name="getGSMdata" version="1.16.2"> - <description> - from GEO - </description> <requirements> - <requirement type="package" version="3.2.1">R</requirement> +<requirement type="package" version="1.20.0">entrez-direct</requirement> </requirements> <stdio> <exit_code range="1:" /> |
| b |
| diff -r c1bf6f112a19 -r 225b0a8f9f3e getGSMdata/test-data/._.DS_Store |
| b |
| Binary file getGSMdata/test-data/._.DS_Store has changed |
| b |
| diff -r c1bf6f112a19 -r 225b0a8f9f3e getGSMdata/tool_dependencies.xml --- a/getGSMdata/tool_dependencies.xml Mon Mar 20 06:58:17 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| b'@@ -1,279 +0,0 @@\n-<?xml version=\'1.0\' encoding=\'utf-8\'?>\n- <tool_dependency>\n- <actions>\n- <action type="setup_r_environment">\n- <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">\n- <package name="R" version="3.2.1" />\n- </repository>\n- <package sha256sum="397c3c90af966f48eebe8f5d9e40c41b17541f0baaa102eec3ea4faae5a2bd49">\n- https://depot.galaxyproject.org/software/munsell/munsell_0.4.3.tar.gz\n- </package>\n- <package sha256sum="0d8069eb48e91f6f6d6a9148f4e2dc5026cabead15dd15fc343eff9cf33f538f">\n- https://depot.galaxyproject.org/software/labeling/labeling_0.3.tar.gz\n- </package>\n- <package sha256sum="762bcb9b5188274fd81d82f785cf2846a5acc61fad55e2ff8ec1502282c27881">\n- https://depot.galaxyproject.org/software/DO.db/DO.db_2.9.tar.gz\n- </package>\n- <package sha256sum="de6f46918b40bcf4f8c03442f2a0411f1796794e0e7b00770ed0aac56601833d">\n- https://bioarchive.galaxyproject.org/fgsea_1.1.2.tar.gz\n- </package>\n- <package sha256sum="7f1aa58085a030b7855a4e189bea2f17ff72333a1f884f0ab7f5af1fbe101397">\n- https://bioarchive.galaxyproject.org/GOSemSim_2.1.2.tar.gz\n- </package>\n- <package sha256sum="dc64ed09b8b5f8d66ed4936cde3491974d6bc5178dd259b6eab7ef3936aa5602">\n- https://depot.galaxyproject.org/software/igraph/igraph_1.0.1.tar.gz\n- </package>\n- <package sha256sum="f9e132c35d3af919cff291465d030817ff74e56eb6b2770390ae8566881b62ed">\n- https://bioarchive.galaxyproject.org/qvalue_2.7.0.tar.gz\n- </package>\n- <package sha256sum="6d3783610379be4c5676d9236cf66276a166b5b96c18f2759e9b219758959b6b">\n- https://depot.galaxyproject.org/software/reshape2/reshape2_1.4.2.tar.gz\n- </package>\n- <package sha256sum="642b88fb1fce7bac72a0038ce532b65b8a79dffe826fec25033cf386ab630cd3">\n- https://depot.galaxyproject.org/software/scales/scales_0.4.1.tar.gz\n- </package>\n- <package sha256sum="51a74de64296d7cbed04a015a9f9725de95adb5e04301d1cd58190d7365fb104">\n- https://bioarchive.galaxyproject.org/biomaRt_2.31.3.tar.gz\n- </package>\n- <package sha256sum="801e4869830ff3da1d38e41f5a2296a54fc10a7419c6ffb108582850c701e76f">\n- https://depot.galaxyproject.org/software/gtable/gtable_0.2.0.tar.gz\n- </package>\n- <package sha256sum="ed8a8bd0591223f742be80fd1cd8c4a9618d0f04011ec95c272b61ea45193104">\n- https://depot.galaxyproject.org/software/tibble/tibble_1.2.tar.gz\n- </package>\n- <package sha256sum="13738f55b2044184fe91f53d17516a445dfb508227527921218cda6f01f98dcb">\n- https://depot.galaxyproject.org/software/lazyeval/lazyeval_0.2.0.tar.gz\n- </package>\n- <package sha256sum="8097ec0e4868f6bf746f821cff7842f696e874bb3a84f1b2aa977ecd961c3e4e">\n- https://depot.galaxyproject.org/software/gdata/gdata_2.17.0.tar.gz\n- </package>\n- <package sha256sum="d32a73febf00930355cc00f3e4e71357412e0f163faae6a4bf7f552cacfe9af4">\n- https://depot.galaxyproject.org/software/caTools/caTools_1.17.1.tar.gz\n- </package>\n- <package sha256sum="13636'..b' <package sha256sum="d999620688354c283de5bb305203f5db70271b4dfdc23577cae8c2ba94c9e349">\n- https://depot.galaxyproject.org/software/quadprog/quadprog_1.5-5.tar.gz\n- </package>\n- <package sha256sum="cd26dbd60b2e2060541c4bb579ec1e0f6c262501431460b096b5fef323204432">\n- https://bioarchive.galaxyproject.org/GEOquery_2.41.0.tar.gz\n- </package>\n- <package sha256sum="bee70645c7cc88250761092762a9d293b4644f311047baecf49fde766d3059bc">\n- https://bioarchive.galaxyproject.org/Biobase_2.35.0.tar.gz\n- </package>\n- <package sha256sum="531aa7042bad9fc72d4b6868cc9f78fe24f5c27e36703c6be78d5eaf1b828ca1">\n- https://bioarchive.galaxyproject.org/minfi_1.21.2.tar.gz\n- </package>\n- <package sha256sum="c6133611cc991dfc17410d06a9ddcc6dcff0153bceffdf7d5a9b7dc42f31afa6">\n- https://depot.galaxyproject.org/software/org.Hs.eg.db/org.Hs.eg.db_3.4.0.tar.gz\n- </package>\n- <package sha256sum="605aa3643588a2f40a942fa760b92662060a0dfedb26b4e4cd6f1a78b703093f">\n- https://depot.galaxyproject.org/software/FDb.InfiniumMethylation.hg19/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz\n- </package>\n- <package sha256sum="cf61732ef9b38ecb6579055d1cd145198ad23a5a9ae4378f94a1494e6c56c884">\n- https://depot.galaxyproject.org/software/data.table/data.table_1.10.0.tar.gz\n- </package>\n- <package sha256sum="d47be4430a1c343c20f9d3f67b8511506904e46be13ea4199769f012f1449209">\n- https://depot.galaxyproject.org/software/GO.db/GO.db_3.4.0.tar.gz\n- </package>\n- <package sha256sum="dfccd4b4d6ec90cd7628fd128d2456d792f406cee4d32b13448dcb0ffe4ab056">\n- https://depot.galaxyproject.org/software/NMF/NMF_0.20.6.tar.gz\n- </package>\n- <package sha256sum="7fa594d9576592e393283ec4fc79fd72128f663bd516e05651957ce1e6fe3c38">\n- https://depot.galaxyproject.org/software/colorspace/colorspace_1.3-1.tar.gz\n- </package>\n- <package sha256sum="31151eaf36f70bdc1172da5ff5088ee51cc0a3db4ead59c7c38c25316d580dd1">\n- https://depot.galaxyproject.org/software/dichromat/dichromat_2.0-0.tar.gz\n- </package>\n- <package sha256sum="7a4957c66ff622d7d1456adfbb728c60d406cdb2a754979797f9dcb0dc8fee99">\n- https://depot.galaxyproject.org/software/fastmatch/fastmatch_1.0-4.tar.gz\n- </package>\n- <package sha256sum="5183e8dd7943df11c0f44460566adf06c03d5320f142699298f516d423b06ce1">\n- https://depot.galaxyproject.org/software/irlba/irlba_2.1.2.tar.gz\n- </package>\n- <package sha256sum="19ad78c16bd5757333e7abbd5eebcec081deb494c9a4b6eec6919a3747b3386f">\n- https://depot.galaxyproject.org/software/pkgmaker/pkgmaker_0.22.tar.gz\n- </package>\n- <package sha256sum="58a5c43b8012ca5e509fa29a8daf6f24f097b8eb021a723f6a9c33db1dd3f430">\n- https://depot.galaxyproject.org/software/registry/registry_0.3.tar.gz\n- </package>\n- <package sha256sum="27019835b750f470b13dbb7fecd3b839a61b52774e23fffa191f919533768fb9">\n- https://depot.galaxyproject.org/software/rngtools/rngtools_1.2.4.tar.gz\n- </package>\n- </action>\n- </actions>\n- <readme>\n- </readme>\n- </tool_dependency>\n' |