| Previous changeset 0:af879fc0d734 (2015-06-26) |
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Commit message:
planemo upload for repository https://github.com/kaktus42/galaxytools/tree/master/tools/stacks commit b7d7874d721ed5ac647eecf630b46deaae1a68f2-dirty |
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modified:
process_radtags.xml process_radtags_rename.sh |
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added:
stacks_0.1.1_toolshed.tar.gz |
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| diff -r af879fc0d734 -r 228d0cbc14f9 process_radtags.xml --- a/process_radtags.xml Fri Jun 26 16:48:45 2015 -0400 +++ b/process_radtags.xml Mon Jun 29 17:22:59 2015 -0400 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="process_radtags" name="process_radtags" version="0.1.0"> +<tool id="process_radtags" name="process_radtags" version="0.1.1"> <description>from Stacks toolbox</description> @@ -146,10 +146,9 @@ <collection name="split_output" type="list" label="@OUTPUT_NAME_PREFIX@ on ${on_string} (Fastq Collection)"> <discover_datasets pattern="sample_(?P<designation>.+)\.(?P<ext>.+)" directory="splits" /> </collection> - <data format="txt" name="log_file" label="@OUTPUT_NAME_PREFIX@ on ${on_string} (log)"> - <discover_datasets pattern="(?P<designation>.+)\.log" ext="txt" directory="output" visible="true" /> - <discover_datasets pattern="(?P<designation>.+)\.(?P<ext>.+)\.discards" directory="output" visible="true" /> - </data> + <data format="txt" name="log_file" label="@OUTPUT_NAME_PREFIX@ on ${on_string} (log)" /> + <data format="txt" name="report" label="@OUTPUT_NAME_PREFIX@ on ${on_string} (Report)" from_work_dir="output/process_radtags.log" /> + <data format_source="fastq_input1" name="discards" label="@OUTPUT_NAME_PREFIX@ on ${on_string} (Discards)" from_work_dir="output/discards.discards" /> </outputs> <tests> @@ -249,4 +248,8 @@ ]]> </help> + + <citations> + <citation type="doi">10.1111/mec.12354</citation> + </citations> </tool> |
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| diff -r af879fc0d734 -r 228d0cbc14f9 process_radtags_rename.sh --- a/process_radtags_rename.sh Fri Jun 26 16:48:45 2015 -0400 +++ b/process_radtags_rename.sh Mon Jun 29 17:22:59 2015 -0400 |
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| @@ -2,8 +2,7 @@ EXT=$1 -mv output/process_radtags.log output/Report.log -mv output/*.discards output/Discards.${EXT}.discards +mv output/*.discards output/discards.discards mkdir splits mv output/sample_* splits #ls -lah output splits |
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| diff -r af879fc0d734 -r 228d0cbc14f9 stacks_0.1.1_toolshed.tar.gz |
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| Binary file stacks_0.1.1_toolshed.tar.gz has changed |