Repository 'ncbi_sra_toolkit'
hg clone https://toolshed.g2.bx.psu.edu/repos/matt-shirley/ncbi_sra_toolkit

Changeset 24:22d9fe442c50 (2015-03-30)
Previous changeset 23:b94593ba997b (2015-03-30) Next changeset 25:393a04ec0fa9 (2015-03-30)
Commit message:
This is coming together.
modified:
tool_dependencies.xml
b
diff -r b94593ba997b -r 22d9fe442c50 tool_dependencies.xml
--- a/tool_dependencies.xml Mon Mar 30 21:23:35 2015 -0400
+++ b/tool_dependencies.xml Mon Mar 30 21:33:57 2015 -0400
b
@@ -15,7 +15,7 @@
             ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
             make
             make install
-            cd $INSTALL_DIR/ngs/ngs-sdk
+            cd $INSTALL_DIR/src/ngs/ngs-sdk
             ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
             make
             make install
@@ -23,7 +23,8 @@
             ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build --with-ncbi-vdb-build=$INSTALL_DIR/build --with-ncbi-vdb-sources=$INSTALL_DIR/src/ncbi-vdb --with-ngs-sdk-prefix=$INSTALL_DIR
             make
             make install
-            sed -i -e "s|\$(HOME)|$INSTALL_DIR|g" -e "s|cache-enabled = \"true\"|cache-enabled = \"false\"|" $INSTALL_DIR/lib64/ncbi/default.kfg
+            cd $INSTALL_DIR/bin
+            ./vdb-config -s "cache-enabled = false"
         </action>
         <action type="set_environment"><environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable></action>
       </actions>