Repository 'package_trinityrnaseq_r20140717'
hg clone https://toolshed.g2.bx.psu.edu/repos/anmoljh/package_trinityrnaseq_r20140717

Changeset 8:22e5aa74fc50 (2015-09-03)
Previous changeset 7:484a0e253167 (2015-09-03) Next changeset 9:e1a35a46c53d (2015-09-03)
Commit message:
fixing -lcurses/-lncurses errors
modified:
tool_dependencies.xml
b
diff -r 484a0e253167 -r 22e5aa74fc50 tool_dependencies.xml
--- a/tool_dependencies.xml Thu Sep 03 14:30:45 2015 +0100
+++ b/tool_dependencies.xml Thu Sep 03 15:41:56 2015 +0100
b
@@ -18,7 +18,7 @@
                         <package name="zlib" version="1.2.8" />
                     </repository>
                 </action>
-                <action type="shell_command">sed -i.bak -e 's/TARGETS=jellyfish rsem transdecoder others/TARGETS=jellyfish transdecoder others/' trinity-plugins/Makefile</action>
+                <action type="shell_command">sed -i.bak -e '/tar -zxvf ${RSEM_CODE}.tar.gz/a \\tsed -e "s/-lcurses/-lncurses/" ./tmp.rsem/sam/Makefile' trinity-plugins/Makefile</action>
                 <action type="shell_command">make</action>
                 <action type="move_directory_files">
                     <source_directory>.</source_directory>