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Commit message:
Uploaded |
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modified:
bin/piPipe.pl |
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| diff -r a8a6e346893f -r 241aa6141cac bin/piPipe.pl --- a/bin/piPipe.pl Tue Nov 28 08:54:34 2017 -0500 +++ b/bin/piPipe.pl Tue Nov 28 08:54:52 2017 -0500 |
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| @@ -245,8 +245,8 @@ if ( $Pcheck eq 'true' ) { my $ppp = $group_dir.'PPPartners/'; mkdir $ppp; - print $report "ping_pong_partners $group_dir/bonafide_reads/TEs.sam $ppp\n"; - ping_pong_partners ( $group_dir.'TEs.fai', $group_dir.'bonafide_reads/bonafide_reads-TEs_sorted.bam', $ppp, $min ); + print $report "ping_pong_partners $group_dir/piRNAs/TEs.sam $ppp\n"; + ping_pong_partners ( $group_dir.'TEs.fai', $group_dir.'piRNAs/piRNAs-TEs_sorted.bam', $ppp, $pi_min ); my $ppp_page = $dir.$fastq_n[$child].'-bonafide_reads-PPP.html'; ppp_page ( $group_dir, $ppp_page, \@fastq_n, $fastq_n[$child], $ppp, $dir ); } |