| Previous changeset 2:6e2731b13533 (2022-07-05) Next changeset 4:f8bcc852f6b3 (2024-02-09) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hamronization commit f09c6b7e45ccd61956942b5aab76c0c8ccc0fe03 |
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modified:
hamronize_summarize.xml macros.xml |
| b |
| diff -r 6e2731b13533 -r 243c87f34f39 hamronize_summarize.xml --- a/hamronize_summarize.xml Tue Jul 05 22:37:53 2022 +0000 +++ b/hamronize_summarize.xml Fri Aug 05 12:58:46 2022 +0000 |
| [ |
| @@ -1,4 +1,4 @@ -<tool id="hamronize_summarize" name="hamronize: summarize" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> +<tool id="hamronize_summarize" name="hamronize: summarize" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@"> <description> harmorization reports</description> <macros> <import>macros.xml</import> @@ -12,20 +12,19 @@ #elif $report.is_of_type('json'): #set $ext = 'json' #end if - ln -s '$report' ./report_${counter}.${ext} && + ln -s '$report' ./report_${counter}.${ext} && #end for hamronize summarize --summary_type $summary_type - #if $summary_type == "tsv" + #if $summary_type == "tsv" --output output.tsv #elif $summary_type == "json" --output output.json - #else + #else --output output.html #end if - *.tsv - *.json + ./report_* ]]> </command> <inputs> @@ -70,11 +69,12 @@ </tests> <help> <![CDATA[ - **What it does** - This tool will take a list of report and create single sorted report in the specified format just containing the unique entries across input reports. It can handle mixed json and tsv hamronized report formats - - **Inputs** - A list of hamronize reports - ]]> + **What it does** + This tool will take a list of report and create single sorted report in the specified format + just containing the unique entries across input reports. It can handle mixed json and tsv hamronized report formats + **Inputs** + A list of hamronize reports + + ]]> </help> </tool> |
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| diff -r 6e2731b13533 -r 243c87f34f39 macros.xml --- a/macros.xml Tue Jul 05 22:37:53 2022 +0000 +++ b/macros.xml Fri Aug 05 12:58:46 2022 +0000 |
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| @@ -1,17 +1,17 @@ <macros> <token name="@TOOL_VERSION@">1.0.3</token> <token name="@PROFILE@">20.05</token> - + <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">hamronization</requirement> </requirements> </xml> - + <xml name="input_file_name"> <param name="input_file_name" type="text" label="Input file name" help="Sample name which was scanned with the tool"></param> </xml> - + <xml name="reference_database_id"> <param name="reference_database_id" type="text" label="Reference database ID" help="String containing the reference_database_id of this tool"></param> </xml> @@ -23,8 +23,8 @@ <xml name="analysis_software_version"> <param name="analysis_software_version" type="text" label="Analysis software version"></param> </xml> - + <xml name="version_command"> <version_command>hamronize --version</version_command> </xml> -</macros> \ No newline at end of file +</macros> |