| Previous changeset 11:da1a2d98dab1 (2019-03-04) |
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Commit message:
planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty |
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modified:
kraken2.xml macros.xml |
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| diff -r da1a2d98dab1 -r 269ea4b78bbb kraken2.xml --- a/kraken2.xml Mon Mar 04 17:29:41 2019 -0500 +++ b/kraken2.xml Mon Mar 04 20:22:06 2019 -0500 |
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| @@ -9,10 +9,9 @@ <version_command>kraken2 --version</version_command> <command detect_errors="exit_code"> <![CDATA[ - @SET_DATABASE_PATH@ && kraken2 --threads \${GALAXY_SLOTS:-1} - --db '$kraken2_database' + --db '${kraken2_database.fields.path}' #if $single_paired.single_paired_selector == 'yes' '${single_paired.forward_input}' '${single_paired.reverse_input}' #elif $single_paired.single_paired_selector == "collection": |
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| diff -r da1a2d98dab1 -r 269ea4b78bbb macros.xml --- a/macros.xml Mon Mar 04 17:29:41 2019 -0500 +++ b/macros.xml Mon Mar 04 20:22:06 2019 -0500 |
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| @@ -15,5 +15,4 @@ <citation type="doi">10.1186/gb-2014-15-3-r46</citation> </citations> </xml> - <token name="@SET_DATABASE_PATH@">export KRAKEN2_DB_PATH='${kraken2_database.fields.path}'</token> </macros> |