| Previous changeset 52:8031a47f67c6 (2016-06-08) Next changeset 54:0f5028e0c39c (2016-08-27) |
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Commit message:
Uploaded |
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modified:
SAINT_preprocessing.py |
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| diff -r 8031a47f67c6 -r 26b5bd96332e SAINT_preprocessing.py --- a/SAINT_preprocessing.py Wed Jun 08 10:36:32 2016 -0400 +++ b/SAINT_preprocessing.py Sat Aug 27 20:25:09 2016 -0400 |
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| @@ -110,6 +110,7 @@ db_len = len(data_lines) seqlength = 0 count = 0 + last_line = data_lines[-1] for data_line in data_lines: if ">sp" in data_line: namer = data_line.split("|")[2] @@ -124,6 +125,8 @@ while ">sp" not in data_lines[match]: if match <= db_len: seqlength = seqlength + len(data_lines[match].strip()) + if data_lines[match] == last_line: + break match = match + 1 else: break @@ -140,6 +143,8 @@ while ">sp" not in data_lines[match]: if match <= db_len: seqlength = seqlength + len(data_lines[match].strip()) + if data_lines[match] == last_line: + break match = match + 1 else: break |