| Previous changeset 34:05c5844e037b (2016-04-27) Next changeset 36:bc9c7764cc2f (2016-05-19) |
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Commit message:
Uploaded |
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modified:
SAINT_preprocessing_mq_pep.py |
| b |
| diff -r 05c5844e037b -r 26cc583a4ae4 SAINT_preprocessing_mq_pep.py --- a/SAINT_preprocessing_mq_pep.py Wed Apr 27 10:35:22 2016 -0400 +++ b/SAINT_preprocessing_mq_pep.py Thu May 19 10:02:48 2016 -0400 |
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| @@ -128,7 +128,7 @@ no_error_inter(MaxQuant_input) os.rename('prey.txt', sys.argv[5]) elif prey == 'false': - if os.path.isfile('error proteins.txt') == True: + if os.path.isfile('./error_proteins.txt') == True: no_error_inter(MaxQuant_input) pass elif prey != 'true' or 'false': @@ -139,7 +139,7 @@ def get_info(uniprot_accession_in): # Get aa lengths and gene name. - error = open('error proteins.txt', 'a+') + error = open('./error_proteins.txt', 'a+') data = open(fasta_db, 'r') data_lines = data.readlines() db_len = len(data_lines) @@ -239,7 +239,7 @@ def no_error_inter(MaxQuant_input): # Remake inter file without protein errors from Uniprot. - err = readtab("error proteins.txt") + err = readtab("./error_proteins.txt") bait = readtab(baitfile) data = read_MaxQuant(MaxQuant_input).data header = read_MaxQuant(MaxQuant_input).header |