| Previous changeset 2:ec38f053b647 (2017-09-12) Next changeset 4:713d8c903d0d (2017-09-13) |
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Commit message:
planemo upload commit 93e677982c3636da455de2f827a87e516c7985ac-dirty |
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modified:
chimerascan.xml |
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| diff -r ec38f053b647 -r 27d8ed014662 chimerascan.xml --- a/chimerascan.xml Tue Sep 12 13:59:07 2017 -0400 +++ b/chimerascan.xml Tue Sep 12 14:13:20 2017 -0400 |
| [ |
| @@ -1,13 +1,15 @@ <tool id="chimerascan" name="ChimeraScan"> <description>A tool for identifying chimeric transcription in sequencing data.</description> - <command detect_errors="exit_code"> - bash $__tool_directory__/run.sh && python $__tool_directory__/chimerascan_run.py -p 8 $__tool_directory__/myindex + <command detect_errors="exit_code"><![CDATA[ + bash $__tool_directory__/run.sh && + python $__tool_directory__/chimerascan_run.py -p 8 $__tool_directory__/myindex #if $input_type_conditional.chimerascan_input_type == "paired" $input_type_conditional.input_1 $input_type_conditional.input_2 #else $input_type_conditional.input.forward $input_type_conditional.input.reverse #end if $galaxy_output + ]]> </command> <inputs> <conditional name="input_type_conditional"> |