| Previous changeset 17:58b58d95b0e0 (2016-10-21) Next changeset 19:4e97cb4310ac (2016-10-21) |
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Commit message:
Uploaded |
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added:
beagle_impute.sh |
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| diff -r 58b58d95b0e0 -r 27fb6c2a98a3 beagle_impute.sh --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/beagle_impute.sh Fri Oct 21 06:30:52 2016 -0400 |
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| @@ -0,0 +1,18 @@ +#!/bin/bash + + +vcf_input=$1 +ref=$2 +out="out_imputed" + +directory=`dirname $0` + +mkdir tmpdir$$ + +cp -rf $vcf_input tmpdir$$/input.vcf + + +java -Xmx2g -jar $directory/beagle.jar ref=$ref gt=$vcf_input out=$out + + +rm -rf tmpdir$$ \ No newline at end of file |