Repository 'prohits_dotplot_generator'
hg clone https://toolshed.g2.bx.psu.edu/repos/bornea/prohits_dotplot_generator

Changeset 17:296e40bfe2d7 (2016-03-16)
Previous changeset 16:89a7ee06257f (2016-03-16) Next changeset 18:7d59acf99322 (2016-04-14)
Commit message:
Uploaded
added:
test_files/SC_SAINT_list.txt
b
diff -r 89a7ee06257f -r 296e40bfe2d7 test_files/SC_SAINT_list.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test_files/SC_SAINT_list.txt Wed Mar 16 12:11:39 2016 -0400
b
b'@@ -0,0 +1,473 @@\n+Bait\tPrey\tPreyGene\tSpec\tSpecSum\tAvgSpec\tNumReplicates\tctrlCounts\tAvgP\tMaxP\tTopoAvgP\tTopoMaxP\tSaintScore\tlogOddsScore\tFoldChange\tBFDR\tboosted_by\n+WT_EGFR\tEGFR_HUMAN\tEGFR\t67|52|45|55\t219\t54.75\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t68.87\t547.50\t0.00\t\n+WT_EGFR\tERBB2_HUMAN\tERBB2\t4|5|3|5\t17\t4.25\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t6.28\t42.50\t0.00\t\n+WT_EGFR\tP85B_HUMAN\tPIK3R2\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+WT_EGFR\tP55G_HUMAN\tPIK3R3\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+WT_EGFR\tP85A_HUMAN\tPIK3R1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+WT_EGFR\tK2C1_HUMAN\tKRT1\t3|4|6|5\t18\t4.50\t4\t10|10|7|7\t0.00\t0.00\t0.00\t0.00\t0.00\t-27.06\t0.53\t0.51\t\n+WT_EGFR\tK1C10_HUMAN\tKRT10\t2|0|3|3\t8\t2.00\t4\t1|2|4|3\t0.01\t0.02\t0.01\t0.02\t0.01\t-9.56\t0.80\t0.49\t\n+WT_EGFR\tK1C16_HUMAN\tKRT16\t0|0|2|1\t3\t0.75\t4\t1|1|2|2\t0.03\t0.12\t0.03\t0.12\t0.03\t-5.35\t0.50\t0.47\t\n+WT_EGFR\tGRB2_HUMAN\tGRB2\t2|0|2|2\t6\t1.50\t4\t0|0|0|0\t0.74\t0.99\t0.74\t0.99\t0.74\t-0.11\t15.00\t0.05\t\n+WT_EGFR\tGRP78_HUMAN\tHSPA5\t16|14|11|12\t53\t13.25\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t19.16\t132.50\t0.00\t\n+WT_EGFR\tK22E_HUMAN\tKRT2\t2|3|6|4\t15\t3.75\t4\t4|4|1|1\t0.15\t0.50\t0.15\t0.50\t0.15\t-5.61\t1.50\t0.44\t\n+WT_EGFR\tK2C8_HUMAN\tKRT8\t1|1|2|2\t6\t1.50\t4\t0|0|0|0\t0.49\t0.99\t0.49\t0.99\t0.49\t2.40\t15.00\t0.19\t\n+WT_EGFR\tK2C5_HUMAN\tKRT5\t1|1|3|2\t7\t1.75\t4\t1|1|2|0\t0.29\t0.74\t0.29\t0.74\t0.29\t-1.74\t1.75\t0.26\t\n+WT_EGFR\tK2C4_HUMAN\tKRT4\t0|0|0|0\t0\t0.00\t4\t0|1|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.65\t0.00\t0.51\t\n+WT_EGFR\tK2C6B_HUMAN\tKRT6B\t1|2|4|4\t11\t2.75\t4\t2|2|2|1\t0.25\t0.47\t0.25\t0.47\t0.25\t-4.44\t1.57\t0.42\t\n+WT_EGFR\tK2C7_HUMAN\tKRT7\t0|0|0|2\t2\t0.50\t4\t0|0|0|0\t0.25\t0.99\t0.25\t0.99\t0.25\t-0.11\t5.00\t0.28\t\n+WT_EGFR\tHSP7C_HUMAN\tHSPA8\t15|10|12|11\t48\t12.00\t4\t0|0|1|1\t1.00\t1.00\t1.00\t1.00\t1.00\t12.83\t24.00\t0.00\t\n+WT_EGFR\tPK3CA_HUMAN\tPIK3CA\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+WT_EGFR\tERBB3_HUMAN\tERBB3\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+WT_EGFR\tADT2_HUMAN\tSLC25A5\t5|3|5|5\t18\t4.50\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t6.28\t45.00\t0.00\t\n+WT_EGFR\tADT3_HUMAN\tSLC25A6\t5|4|5|5\t19\t4.75\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t8.02\t47.50\t0.00\t\n+WT_EGFR\tK1C9_HUMAN\tKRT9\t1|1|1|0\t3\t0.75\t4\t0|0|1|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.65\t3.00\t0.51\t\n+WT_EGFR\tTBA1A_HUMAN\tTUBA1A\t5|3|5|3\t16\t4.00\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t6.28\t40.00\t0.00\t\n+WT_EGFR\tTBA4A_HUMAN\tTUBA4A\t3|2|3|1\t9\t2.25\t4\t0|0|0|0\t0.75\t1.00\t0.75\t1.00\t0.75\t2.40\t22.50\t0.02\t\n+WT_EGFR\tARHG5_HUMAN\tARHGEF5\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+WT_EGFR\tPK3CB_HUMAN\tPIK3CB\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+WT_EGFR\tIRS1_HUMAN\tIRS1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+WT_EGFR\tTBB5_HUMAN\tTUBB\t8|6|5|2\t21\t5.25\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t4.43\t52.50\t0.00\t\n+WT_EGFR\tTBB3_HUMAN\tTUBB3\t2|2|3|1\t8\t2.00\t4\t0|0|0|0\t0.74\t1.00\t0.74\t1.00\t0.74\t2.40\t20.00\t0.05\t\n+WT_EGFR\tHS90A_HUMAN\tHSP90AA1\t3|3|1|2\t9\t2.25\t4\t0|0|0|0\t0.75\t1.00\t0.75\t1.00\t0.75\t2.40\t22.50\t0.02\t\n+WT_EGFR\tHS90B_HUMAN\tHSP90AB1\t4|2|1|2\t9\t2.25\t4\t0|0|0|0\t0.74\t1.00\t0.74\t1.00\t0.74\t2.40\t22.50\t0.04\t\n+WT_EGFR\t1433E_HUMAN\tYWHAE\t1|0|0|0\t1\t0.25\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t2.50\t0.51\t\n+WT_EGFR\t1433T_HUMAN\tYWHAQ\t1|0|0|0\t1\t0.25\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t2.50\t0.51\t\n+WT_EGFR\tLPPRC_HUMAN\tLRPPRC\t1|3|3|3\t10\t2.50\t4\t0|0|0|0\t0.75\t1.00\t0.75\t1.00\t0.75\t2.40\t25.00\t0.00\t\n+WT_EGFR\tERRFI_HUMAN\tERRFI1\t1|2|1|1\t5\t1.25\t4\t0|0|0|0\t0.25\t0.99\t0.25\t0.99\t0.25\t2.40\t12.50\t0.28\t\n+WT_EGFR\tAP2A1_HUMAN\tAP2A1\t1|1|1|1\t4\t1.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t2.40\t10.00\t0.51\t\n+WT_EGFR\tGRB7_HUMAN\tGRB7\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+WT_EGFR\tSTAT3_HUMAN\tSTAT3\t4|5|3|3\t15\t3.75\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t6.28\t37.50\t0.00\t\n+WT_EGFR\tANXA2_HUMAN\tANXA2\t3|4|0|1\t8\t2.00\t4\t0|0|0|0\t0.50\t1.00\t0.50\t1.00\t0.50\t-0.11\t20.00\t0.10\t\n+WT_EGFR\tPTPRA_HUMAN\tPTPRA\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+WT_EGFR\tC1QBP_HUMAN\tC1QBP\t0|0|0|0\t0\t0.00\t4\t7|'..b'\t0|0|1|1\t0.00\t0.00\t0.00\t0.00\t0.00\t-1.55\t1.00\t0.51\t\n+ER_P85B\tPK3CA_HUMAN\tPIK3CA\t3|3|6|6\t18\t4.50\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t6.28\t45.00\t0.00\t\n+ER_P85B\tERBB3_HUMAN\tERBB3\t1|0|2|1\t4\t1.00\t4\t0|0|0|0\t0.25\t0.99\t0.25\t0.99\t0.25\t-0.11\t10.00\t0.28\t\n+ER_P85B\tADT2_HUMAN\tSLC25A5\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tADT3_HUMAN\tSLC25A6\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tK1C9_HUMAN\tKRT9\t1|0|1|0\t2\t0.50\t4\t0|0|1|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.65\t2.00\t0.51\t\n+ER_P85B\tTBA1A_HUMAN\tTUBA1A\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tTBA4A_HUMAN\tTUBA4A\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tARHG5_HUMAN\tARHGEF5\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tPK3CB_HUMAN\tPIK3CB\t1|1|4|2\t8\t2.00\t4\t0|0|0|0\t0.50\t1.00\t0.50\t1.00\t0.50\t2.40\t20.00\t0.14\t\n+ER_P85B\tIRS1_HUMAN\tIRS1\t2|3|3|4\t12\t3.00\t4\t0|0|0|0\t1.00\t1.00\t1.00\t1.00\t1.00\t4.43\t30.00\t0.00\t\n+ER_P85B\tTBB5_HUMAN\tTUBB\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tTBB3_HUMAN\tTUBB3\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tHS90A_HUMAN\tHSP90AA1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tHS90B_HUMAN\tHSP90AB1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\t1433E_HUMAN\tYWHAE\t0|0|1|1\t2\t0.50\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t5.00\t0.51\t\n+ER_P85B\t1433T_HUMAN\tYWHAQ\t0|0|1|1\t2\t0.50\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t5.00\t0.51\t\n+ER_P85B\tLPPRC_HUMAN\tLRPPRC\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tERRFI_HUMAN\tERRFI1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tAP2A1_HUMAN\tAP2A1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tGRB7_HUMAN\tGRB7\t1|1|1|0\t3\t0.75\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t7.50\t0.51\t\n+ER_P85B\tSTAT3_HUMAN\tSTAT3\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tANXA2_HUMAN\tANXA2\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tPTPRA_HUMAN\tPTPRA\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tC1QBP_HUMAN\tC1QBP\t0|0|0|0\t0\t0.00\t4\t7|5|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-11.03\t0.00\t0.51\t\n+ER_P85B\tSHC1_HUMAN\tSHC1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tPTN11_HUMAN\tPTPN11\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tPON2_HUMAN\tPON2\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tMET_HUMAN\tMET\t0|0|1|1\t2\t0.50\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t5.00\t0.51\t\n+ER_P85B\tCRKL_HUMAN\tCRKL\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tCBL_HUMAN\tCBL\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tPHLA2_HUMAN\tPHLDA2\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tRT27_HUMAN\tMRPS27\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tM2OM_HUMAN\tSLC25A11\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tSTAT1_HUMAN\tSTAT1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tSLIRP_HUMAN\tSLIRP\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tPK3CD_HUMAN\tPIK3CD\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tGRP75_HUMAN\tHSPA9\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tAIFM1_HUMAN\tAIFM1\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tPHB_HUMAN\tPHB\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tHNRPK_HUMAN\tHNRNPK\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tTMM33_HUMAN\tTMEM33\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n+ER_P85B\tRT34_HUMAN\tMRPS34\t0|0|0|0\t0\t0.00\t4\t0|0|0|0\t0.00\t0.00\t0.00\t0.00\t0.00\t-0.11\t0.00\t0.51\t\n'