| Previous changeset 1:cf875cbe2df4 (2014-03-27) Next changeset 3:1f54e98616af (2017-04-04) |
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Commit message:
planemo upload commit 5ad726dc73203a704666033cd3bf70b82575978f |
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modified:
data_manager/data_manager_sam_fasta_index_builder.py tool_dependencies.xml |
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| diff -r cf875cbe2df4 -r 2a1ac1abc3f7 data_manager/data_manager_sam_fasta_index_builder.py --- a/data_manager/data_manager_sam_fasta_index_builder.py Thu Mar 27 15:08:42 2014 -0400 +++ b/data_manager/data_manager_sam_fasta_index_builder.py Wed Aug 26 13:22:37 2015 -0400 |
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| @@ -27,6 +27,7 @@ def build_sam_index( data_manager_dict, fasta_filename, target_directory, dbkey, sequence_id, sequence_name, data_table_name=DEFAULT_DATA_TABLE_NAME ): #TODO: allow multiple FASTA input files + assert os.path.exists( fasta_filename ), 'FASTA file "%s" is missing, cannot build samtools index.' % fasta_filename fasta_base_name = os.path.split( fasta_filename )[-1] sym_linked_fasta_filename = os.path.join( target_directory, fasta_base_name ) os.symlink( fasta_filename, sym_linked_fasta_filename ) |
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| diff -r cf875cbe2df4 -r 2a1ac1abc3f7 tool_dependencies.xml --- a/tool_dependencies.xml Thu Mar 27 15:08:42 2014 -0400 +++ b/tool_dependencies.xml Wed Aug 26 13:22:37 2015 -0400 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="samtools" version="0.1.19"> - <repository changeset_revision="1ef76f8d8e52" name="package_samtools_0_1_19" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |