| Previous changeset 5:6f2a0b6a8da2 (2017-08-05) Next changeset 7:481efc8a2fe2 (2019-04-30) |
|
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed |
|
modified:
beta_diversity_through_plots_html_generation.py test-data/make_otu_heatmap/basic_heatmap.svg test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq |
| b |
| diff -r 6f2a0b6a8da2 -r 2a39329e51c5 beta_diversity_through_plots_html_generation.py --- a/beta_diversity_through_plots_html_generation.py Sat Aug 05 07:15:16 2017 -0400 +++ b/beta_diversity_through_plots_html_generation.py Tue Oct 30 20:03:59 2018 -0400 |
| [ |
| @@ -21,7 +21,7 @@ for directory in dir_list: regexp_result = re.search( - '([a-zA-Z\_]*)_emperor_pcoa_plot', + r'([a-zA-Z\_]*)_emperor_pcoa_plot', directory) metric = regexp_result.group(1) s += '\t\t\t\t<li>' + metric + ': ' |
| b |
| diff -r 6f2a0b6a8da2 -r 2a39329e51c5 test-data/make_otu_heatmap/basic_heatmap.svg --- a/test-data/make_otu_heatmap/basic_heatmap.svg Sat Aug 05 07:15:16 2017 -0400 +++ b/test-data/make_otu_heatmap/basic_heatmap.svg Tue Oct 30 20:03:59 2018 -0400 |
| b |
| b'@@ -5,183 +5,175 @@\n <svg height="360pt" version="1.1" viewBox="0 0 360 360" width="360pt" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">\n <defs>\n <style type="text/css">\n-*{stroke-linecap:butt;stroke-linejoin:round;}\n+*{stroke-linecap:butt;stroke-linejoin:round;stroke-miterlimit:100000;}\n </style>\n </defs>\n <g id="figure_1">\n <g id="patch_1">\n- <path d="\n-M0 360\n-L360 360\n-L360 0\n-L0 0\n+ <path d="M 0 360 \n+L 360 360 \n+L 360 0 \n+L 0 0 \n z\n " style="fill:#ffffff;"/>\n </g>\n <g id="axes_1">\n <g id="patch_2">\n- <path d="\n-M42.5819 326.418\n-L310.341 326.418\n-L310.341 15.21\n-L42.5819 15.21\n+ <path d="M 40.6975 325.6025 \n+L 309.498426 325.6025 \n+L 309.498426 15.21 \n+L 40.6975 15.21 \n z\n " style="fill:#ffffff;"/>\n </g>\n- <g clip-path="url(#pcf9eb7027b)">\n- <image height="311.76" id="image210c0d0649" width="268.2" x="42.581875" xlink:href="data:image/png;base64,\n-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'..b'5090261"/>\n+ <use style="stroke:#000000;stroke-width:0.5;" x="331.0025" xlink:href="#m1b85dcea4c" y="159.914846247"/>\n </g>\n </g>\n <g id="text_433">\n <!-- \xe2\x88\x920.8 -->\n- <g transform="translate(335.761875 161.674777761)scale(0.05 -0.05)">\n+ <g transform="translate(335.0025 161.294533747)scale(0.05 -0.05)">\n <use xlink:href="#BitstreamVeraSans-Roman-2212"/>\n <use x="83.7890625" xlink:href="#BitstreamVeraSans-Roman-30"/>\n <use x="147.412109375" xlink:href="#BitstreamVeraSans-Roman-2e"/>\n@@ -14643,12 +13068,12 @@\n <g id="ytick_425">\n <g id="line2d_6">\n <g>\n- <use style="stroke:#000000;stroke-width:0.5;" x="331.761875" xlink:href="#mcb0005524f" y="124.023817696"/>\n+ <use style="stroke:#000000;stroke-width:0.5;" x="331.0025" xlink:href="#m1b85dcea4c" y="123.738634685"/>\n </g>\n </g>\n <g id="text_434">\n <!-- \xe2\x88\x920.6 -->\n- <g transform="translate(335.761875 125.403505196)scale(0.05 -0.05)">\n+ <g transform="translate(335.0025 125.118322185)scale(0.05 -0.05)">\n <use xlink:href="#BitstreamVeraSans-Roman-2212"/>\n <use x="83.7890625" xlink:href="#BitstreamVeraSans-Roman-30"/>\n <use x="147.412109375" xlink:href="#BitstreamVeraSans-Roman-2e"/>\n@@ -14659,12 +13084,12 @@\n <g id="ytick_426">\n <g id="line2d_7">\n <g>\n- <use style="stroke:#000000;stroke-width:0.5;" x="331.761875" xlink:href="#mcb0005524f" y="87.7525451307"/>\n+ <use style="stroke:#000000;stroke-width:0.5;" x="331.0025" xlink:href="#m1b85dcea4c" y="87.5624231235"/>\n </g>\n </g>\n <g id="text_435">\n <!-- \xe2\x88\x920.4 -->\n- <g transform="translate(335.761875 89.1322326307)scale(0.05 -0.05)">\n+ <g transform="translate(335.0025 88.9421106235)scale(0.05 -0.05)">\n <use xlink:href="#BitstreamVeraSans-Roman-2212"/>\n <use x="83.7890625" xlink:href="#BitstreamVeraSans-Roman-30"/>\n <use x="147.412109375" xlink:href="#BitstreamVeraSans-Roman-2e"/>\n@@ -14675,12 +13100,12 @@\n <g id="ytick_427">\n <g id="line2d_8">\n <g>\n- <use style="stroke:#000000;stroke-width:0.5;" x="331.761875" xlink:href="#mcb0005524f" y="51.4812725653"/>\n+ <use style="stroke:#000000;stroke-width:0.5;" x="331.0025" xlink:href="#m1b85dcea4c" y="51.3862115617"/>\n </g>\n </g>\n <g id="text_436">\n <!-- \xe2\x88\x920.2 -->\n- <g transform="translate(335.761875 52.8609600653)scale(0.05 -0.05)">\n+ <g transform="translate(335.0025 52.7658990617)scale(0.05 -0.05)">\n <use xlink:href="#BitstreamVeraSans-Roman-2212"/>\n <use x="83.7890625" xlink:href="#BitstreamVeraSans-Roman-30"/>\n <use x="147.412109375" xlink:href="#BitstreamVeraSans-Roman-2e"/>\n@@ -14691,12 +13116,12 @@\n <g id="ytick_428">\n <g id="line2d_9">\n <g>\n- <use style="stroke:#000000;stroke-width:0.5;" x="331.761875" xlink:href="#mcb0005524f" y="15.21"/>\n+ <use style="stroke:#000000;stroke-width:0.5;" x="331.0025" xlink:href="#m1b85dcea4c" y="15.21"/>\n </g>\n </g>\n <g id="text_437">\n <!-- 0.0 -->\n- <g transform="translate(335.761875 16.5896875)scale(0.05 -0.05)">\n+ <g transform="translate(335.0025 16.5896875)scale(0.05 -0.05)">\n <use xlink:href="#BitstreamVeraSans-Roman-30"/>\n <use x="63.623046875" xlink:href="#BitstreamVeraSans-Roman-2e"/>\n <use x="95.41015625" xlink:href="#BitstreamVeraSans-Roman-30"/>\n@@ -14707,11 +13132,11 @@\n </g>\n </g>\n <defs>\n- <clipPath id="pb6c775f55e">\n- <rect height="311.208125" width="13.387962963" x="318.373912037" y="15.21"/>\n+ <clipPath id="p37c9c288ef">\n+ <rect height="310.3925" width="13.4400462963" x="317.562453704" y="15.21"/>\n </clipPath>\n- <clipPath id="pcf9eb7027b">\n- <rect height="311.208125" width="267.759259259" x="42.581875" y="15.21"/>\n+ <clipPath id="p06160b1141">\n+ <rect height="310.3925" width="268.800925926" x="40.6975" y="15.21"/>\n </clipPath>\n </defs>\n </svg>\n' |
| b |
| diff -r 6f2a0b6a8da2 -r 2a39329e51c5 test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq --- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq Sat Aug 05 07:15:16 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq Tue Oct 30 20:03:59 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# |
| b |
| diff -r 6f2a0b6a8da2 -r 2a39329e51c5 test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq --- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq Sat Aug 05 07:15:16 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq Tue Oct 30 20:03:59 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: ACGTGTACCCAAA + -@CCFFFDEHHHGF \ No newline at end of file +@CCFFFDEHHHGF |
| b |
| diff -r 6f2a0b6a8da2 -r 2a39329e51c5 test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq --- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq Sat Aug 05 07:15:16 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq Tue Oct 30 20:03:59 2018 -0400 |
| b |
| @@ -1,4 +1,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# |
| b |
| diff -r 6f2a0b6a8da2 -r 2a39329e51c5 test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq --- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq Sat Aug 05 07:15:16 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq Tue Oct 30 20:03:59 2018 -0400 |
| b |
| @@ -1,4 +1,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# |
| b |
| diff -r 6f2a0b6a8da2 -r 2a39329e51c5 test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq --- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq Sat Aug 05 07:15:16 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq Tue Oct 30 20:03:59 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# |
| b |
| diff -r 6f2a0b6a8da2 -r 2a39329e51c5 test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq --- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq Sat Aug 05 07:15:16 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq Tue Oct 30 20:03:59 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: ACGTGTACCCAAA + -@CCFFFDEHHHGF \ No newline at end of file +@CCFFFDEHHHGF |
| b |
| diff -r 6f2a0b6a8da2 -r 2a39329e51c5 test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq --- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq Sat Aug 05 07:15:16 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq Tue Oct 30 20:03:59 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# |
| b |
| diff -r 6f2a0b6a8da2 -r 2a39329e51c5 test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq --- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq Sat Aug 05 07:15:16 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq Tue Oct 30 20:03:59 2018 -0400 |
| b |
| @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: ACGTGTACCCAAA + -@CCFFFDEHHHGF \ No newline at end of file +@CCFFFDEHHHGF |
