| Previous changeset 8:66b2c9a128ab (2018-11-22) Next changeset 10:932bcf6c9332 (2018-12-13) |
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Commit message:
Bumped SPAN version to version build 0.9.0.4581 released on Dec 7, 2018 https://github.com/JetBrains-Research/galaxy-applications/commit/e9e440d6fe82bba5cdb92262d423eed6c0f72845 |
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modified:
span.xml tool_dependencies.xml |
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| diff -r 66b2c9a128ab -r 2a543f239157 span.xml --- a/span.xml Thu Nov 22 12:21:15 2018 -0500 +++ b/span.xml Wed Dec 12 04:11:14 2018 -0500 |
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| @@ -1,7 +1,7 @@ -<tool id="span" name="SPAN" version="0.8.0.4533"> +<tool id="span" name="SPAN" version="0.9.0.4581"> <description>Semi-supervised Peak Analyzer for ChIP-Seq data</description> <requirements> - <requirement type="package" version="0.8.0.4533">package_span_jar</requirement> + <requirement type="package" version="0.9.0.4581">package_span_jar</requirement> </requirements> <stdio> <!-- Wrapper ensures anything other than zero is an error --> @@ -82,8 +82,8 @@ Default value is 200bp, approximately the length of one nucleosome."/> <section name="advanced_options" title="Advanced Options"> - <param name="memory" size="6" type="integer" value="2048" min="1024" - label="Memory limit in megabytes" help="Default value is 2048 megabytes"/> + <param name="memory" size="6" type="integer" value="4096" min="1024" + label="Memory limit in megabytes" help="Default value is 4096 megabytes"/> <param name="threads" argument="--threads" size="2" type="integer" value="2" min="1" label="Threads number" help="Default value is 2 threads. SPAN utilizes both multithreading and specialized processor extensions like SSE2, AVX, etc."/> |
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| diff -r 66b2c9a128ab -r 2a543f239157 tool_dependencies.xml --- a/tool_dependencies.xml Thu Nov 22 12:21:15 2018 -0500 +++ b/tool_dependencies.xml Wed Dec 12 04:11:14 2018 -0500 |
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| @@ -4,17 +4,17 @@ Package for downloading latest successful development tools. https://galaxyproject.org/toolshed/tool-dependencies-tag-sets/ --> - <package name="package_span_jar" version="0.8.0.4533" prior_installation_required="True"> + <package name="package_span_jar" version="0.9.0.4581" prior_installation_required="True"> <install version="1.0"> <actions> - <action type="download_by_url">https://download.jetbrains.com/biolabs/span/span-0.8.0.4533.jar</action> + <action type="download_by_url">https://download.jetbrains.com/biolabs/span/span-0.9.0.4581.jar</action> <action type="move_directory_files"> <source_directory>.</source_directory> <destination_directory>$INSTALL_DIR/</destination_directory> </action> <!-- Set environment variable SPAN_JAR so Python script knows where to look --> <action type="set_environment"> - <environment_variable name="SPAN_JAR" action="set_to">$INSTALL_DIR/span-0.8.0.4533.jar</environment_variable> + <environment_variable name="SPAN_JAR" action="set_to">$INSTALL_DIR/span-0.9.0.4581.jar</environment_variable> </action> </actions> </install> |