| Previous changeset 6:3384b6a842b0 (2017-10-30) Next changeset 8:32587f12102c (2018-06-22) |
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Commit message:
Uploaded |
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modified:
gene_family_aligner.xml |
| b |
| diff -r 3384b6a842b0 -r 2ac7090847f9 gene_family_aligner.xml --- a/gene_family_aligner.xml Mon Oct 30 09:52:00 2017 -0400 +++ b/gene_family_aligner.xml Thu Dec 21 09:14:22 2017 -0500 |
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| @@ -47,7 +47,11 @@ #end if #end if #end if -&>proc.log +&>gene_family_aligner_log.txt; +if [[ $? -ne 0 ]]; then + find geneFamilyAlignments_dir -type d -maxdepth 1 -exec cp gene_family_aligner_log.txt {} \; + exit 1; +fi ]]></command> <inputs> <param name="input" format="fasta" type="data_collection" collection_type="list" label="Integrated orthogroup fasta files" /> @@ -129,7 +133,6 @@ <discover_datasets pattern="__name__" directory="geneFamilyAlignments_dir/orthogroups_filtered_aln_fna" format="fasta" /> <filter>codon_alignments == 'yes' and remove_gappy_sequences_cond['remove_gappy_sequences'] == 'yes' and remove_gappy_sequences_cond['remove_sequences_with_gaps_cond']['remove_sequences_with_gaps'] == 'yes'</filter> </collection> - </outputs> <tests> <test> |