| Previous changeset 2:edcf603bedfd (2021-11-16) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tetyper commit 56cee5183887f0b50dadaae1a5cc5bc80c290bdd |
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modified:
tetyper.xml |
| b |
| diff -r edcf603bedfd -r 2b21643ce8d7 tetyper.xml --- a/tetyper.xml Tue Nov 16 19:57:38 2021 +0000 +++ b/tetyper.xml Sun Dec 15 09:08:07 2024 +0000 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="tetyper" name="TETyper" version="@TOOL_VERSION@+galaxy1"> +<tool id="tetyper" name="TETyper" version="@TOOL_VERSION@+galaxy2" profile="23.1"> <description>Transposable Element Typer</description> <macros> <token name="@TOOL_VERSION@">1.1</token> @@ -105,12 +105,12 @@ <data name="snps" format="vcf" from_work_dir="output.vcf" label="${tool.name} on ${on_string}: SNPs"/> <data name="blast" format="tabular" from_work_dir="output_blast.txt" label="${tool.name} on ${on_string}: BLAST alignment"/> <data name="alignment" format="bam" from_work_dir="output.bam" label="${tool.name} on ${on_string}: BWA alignment"/> - <data name="log" format="text" from_work_dir="output.log" label="${tool.name} on ${on_string}: log"> + <data name="log" format="txt" from_work_dir="output.log" label="${tool.name} on ${on_string}: log"> <filter>include_log</filter> </data> </outputs> <tests> - <test> + <test expect_num_outputs="4"> <param name="reference" value="Tn4401b-1.fasta" /> <conditional name="collection_paired"> <param name="selector" value="paired" /> @@ -119,7 +119,7 @@ </conditional> <output name="summary" file="output_summary_1.txt" /> </test> - <test> + <test expect_num_outputs="4"> <param name="reference" value="Tn4401b-1.fasta" /> <conditional name="collection_paired"> <param name="selector" value="paired" /> @@ -136,7 +136,7 @@ </conditional> <output name="summary" file="output_summary_2.txt" /> </test> - <test> + <test expect_num_outputs="5"> <param name="reference" value="Tn4401b-1.fasta" /> <conditional name="collection_paired"> <param name="selector" value="paired" /> @@ -151,7 +151,29 @@ <param name="struct_profiles_source_selector" value="tool_data_table" /> <param name="struct_profiles" value="Tn4401b_struct_profiles" /> </conditional> + <param name="include_log" value="true"/> <output name="summary" file="output_summary_2.txt" /> + <output name="snps"> + <assert_contents> + <has_size min="1"/> + </assert_contents> + </output> + <output name="blast"> + <assert_contents> + <has_n_lines n="2"/> + <has_n_columns n="12"/> + </assert_contents> + </output> + <output name="alignment"> + <assert_contents> + <has_size min="1"/> + </assert_contents> + </output> + <output name="log"> + <assert_contents> + <has_text text="Final output written to: output_summary.txt"/> + </assert_contents> + </output> </test> </tests> <help> |