| Previous changeset 34:5d7a82f49485 (2014-05-15) Next changeset 36:0f015cb32b93 (2014-05-15) |
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Commit message:
fix tool xml file name |
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added:
blast2html.xml |
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removed:
tool_dependencies.xml |
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| diff -r 5d7a82f49485 -r 2b23b4a4d88e blast2html.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/blast2html.xml Thu May 15 18:15:04 2014 +0200 |
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| @@ -0,0 +1,43 @@ +<tool id="blast2html" name="blast2html" version="0.0.2"> + + <description>Convert BLAST XML to HTML</description> + + <requirements> + <requirement type="python-module">jinja2</requirement> + <requirement type="python-module">lxml</requirement> + </requirements> + + <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command> + + <inputs> + <param format="blast" name="input" type="data" label="Source file"/> + </inputs> + + <outputs> + <data format="html" name="output" /> + </outputs> + + <tests> + <test> + <param name="input" value="blast xml example1.xml"/> + <output name="out_file1" file="blast xml example1.html"/> + </test> + <test> + <param name="input" value="blast xml example2.xml"/> + <output name="out_file1" file="blast xml example2.html"/> + </test> + <test> + <param name="input" value="blast xml example3.xml"/> + <output name="out_file1" file="blast xml example3.html"/> + </test> + <test> + <param name="input" value="blast xml example4.xml"/> + <output name="out_file1" file="blast xml example4.html"/> + </test> + </tests> + + <help> + This tool converts the default BLAST XML result into a HTML document + </help> + +</tool> |
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| diff -r 5d7a82f49485 -r 2b23b4a4d88e tool_dependencies.xml --- a/tool_dependencies.xml Thu May 15 18:08:27 2014 +0200 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
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| @@ -1,43 +0,0 @@ -<tool id="blast2html" name="blast2html" version="0.0.2"> - - <description>Convert BLAST XML to HTML</description> - - <requirements> - <requirement type="python-module">jinja2</requirement> - <requirement type="python-module">lxml</requirement> - </requirements> - - <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command> - - <inputs> - <param format="blast" name="input" type="data" label="Source file"/> - </inputs> - - <outputs> - <data format="html" name="output" /> - </outputs> - - <tests> - <test> - <param name="input" value="blast xml example1.xml"/> - <output name="out_file1" file="blast xml example1.html"/> - </test> - <test> - <param name="input" value="blast xml example2.xml"/> - <output name="out_file1" file="blast xml example2.html"/> - </test> - <test> - <param name="input" value="blast xml example3.xml"/> - <output name="out_file1" file="blast xml example3.html"/> - </test> - <test> - <param name="input" value="blast xml example4.xml"/> - <output name="out_file1" file="blast xml example4.html"/> - </test> - </tests> - - <help> - This tool converts the default BLAST XML result into a HTML document - </help> - -</tool> |