| Previous changeset 1:c2ca3bc40523 (2019-10-25) Next changeset 3:f8921da94342 (2020-04-24) |
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Commit message:
"planemo upload for repository https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/ commit 542b6e6848acedbbedb6fa2d4b44c8d476597cdd" |
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modified:
scmap_macros.xml scmap_scmap_cell.xml |
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| diff -r c2ca3bc40523 -r 2b85cec412c3 scmap_macros.xml --- a/scmap_macros.xml Fri Oct 25 08:45:31 2019 -0400 +++ b/scmap_macros.xml Fri Apr 03 06:36:32 2020 -0400 |
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| @@ -1,11 +1,10 @@ <macros> <token name="@TOOL_VERSION@">1.6.0</token> <token name="@HELP@">More information can be found at https://bioconductor.org/packages/release/bioc/html/scmap.html</token> + <token name="@PROFILE@">18.01</token> <xml name="requirements"> <requirements> - <requirement type="package">openblas</requirement> - <requirement type="package">bioconductor-delayedarray</requirement> - <requirement type="package" version="0.0.4">scmap-cli</requirement> + <requirement type="package" version="0.0.5">scmap-cli</requirement> <yield/> </requirements> </xml> |
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| diff -r c2ca3bc40523 -r 2b85cec412c3 scmap_scmap_cell.xml --- a/scmap_scmap_cell.xml Fri Oct 25 08:45:31 2019 -0400 +++ b/scmap_scmap_cell.xml Fri Apr 03 06:36:32 2020 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="scmap_scmap_cell" name="scmap cell projection" version="@TOOL_VERSION@+galaxy0" python_template_version="3.5"> +<tool id="scmap_scmap_cell" name="scmap cell projection" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@"> <description>searches each cell in a query dataset for the nearest neighbours by cosine distance within a collection of reference datasets.</description> <macros> <import>scmap_macros.xml</import> @@ -45,10 +45,10 @@ <param name="index_single_cell_experiment" value="index_cell.rds" ftype="rdata"/> <param name="project_single_cell_experiment" value="test_sce.rds" ftype="rdata"/> <param name="cluster_projection" value="true" ftype="rdata"/> - <output name="output_single_cell_experiment" file="closest_cells_clusters.rds"/> - <output name="closest_cells_clusters_csv" file="closest_cells_clusters.csv" /> - <output name="closest_cells_text_file" file="closest_cells.csv"/> - <output name="closest_cells_similarities_text_file" file="closest_cells_similarities.csv"/> + <output name="output_single_cell_experiment" file="closest_cells_clusters.rds" compare="sim_size"/> + <output name="closest_cells_clusters_csv" file="closest_cells_clusters.csv" compare="sim_size" /> + <output name="closest_cells_text_file" file="closest_cells.csv" compare="sim_size"/> + <output name="closest_cells_similarities_text_file" file="closest_cells_similarities.csv" compare="sim_size"/> </test> </tests> <help><![CDATA[ |