| Next changeset 1:38dafb8b3980 (2015-01-19) |
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Commit message:
Uploaded |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 2c55ff0a3013 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Jan 19 18:52:05 2015 -0500 |
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| @@ -0,0 +1,37 @@ +<?xml version="1.0"?> +<tool_dependency> + + <package name="cmake" version="3.1.0"> + <repository changeset_revision="a18ccb33a785" name="package_cmake_3_1_0" owner="malbuquerque" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + + <package name="samtools" version="0.1.18"> + <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + + <package name="bamtools" version="2.3.0"> + <install version="1.0"> + <actions> + + <action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action> + <action type="shell_command">mkdir build</action> + <action type="shell_command">cd build</action> + <action type="shell_command">cmake ..</action> + <action type="shell_command">make</action> + <action type="shell_command">cd ..</action> + + <action type="move_directory_files"> + <source_directory>./</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + + <action type="set_environment"> + <environment_variable action="set_to" name="BAMTOOLS_ROOT">$INSTALL_DIR</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + + </actions> + </install> + </package> + + </tool_dependency> |