| Previous changeset 1:ad130eaa3a05 (2017-05-12) Next changeset 3:344f606eeb9a (2017-05-18) |
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Commit message:
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/custom_pro_db commit 9910ed076e4b8a3f083351b89fa861d0a4a93beb |
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modified:
customProDB.R customProDB.xml |
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| diff -r ad130eaa3a05 -r 2cba79e6037e customProDB.R --- a/customProDB.R Fri May 12 13:17:40 2017 -0400 +++ b/customProDB.R Wed May 17 20:23:39 2017 -0400 |
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| @@ -99,11 +99,6 @@ file.symlink(bam_file, bamLink) file.symlink(bai_file, paste(bamLink, ".bai", sep="")) - # load from GitHub until conda package is available - download.file("https://github.com/ggrothendieck/sqldf/archive/master.zip", "sqldf.zip", quiet=TRUE) - unzip("sqldf.zip") - devtools::load_all("sqldf-master") - # load customProDB from GitHub (NOTE: downloading the zip is faster than cloning the repo with git2r or devtools::install_github) download.file("https://github.com/chambm/customProDB/archive/master.zip", "customProDB.zip", quiet=TRUE) unzip("customProDB.zip") |
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| diff -r ad130eaa3a05 -r 2cba79e6037e customProDB.xml --- a/customProDB.xml Fri May 12 13:17:40 2017 -0400 +++ b/customProDB.xml Wed May 17 20:23:39 2017 -0400 |
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| @@ -14,7 +14,7 @@ <requirement type="package" version="1.1.2">r-stringi</requirement> <requirement type="package" version="1.1.0">r-stringr</requirement> <requirement type="package" version="1.10.0">r-data.table</requirement> - <!--<requirement type="package" version="0.4_10">r-sqldf</requirement>--> + <requirement type="package" version="0.4_10">r-sqldf</requirement> <requirement type="package" version="0.6_6">r-gsubfn</requirement> <requirement type="package" version="2.3_47">r-chron</requirement> <requirement type="package" version="0.3.10">r-proto</requirement> @@ -57,7 +57,7 @@ --cosmic='$index_path/cosmic.RData' #end if #end if - 2>1 + 2>&1 ]]> </command> <inputs> |