| Previous changeset 4:c159a6ded912 (2013-06-19) Next changeset 6:a6aa7f3cbe7d (2013-12-11) |
|
Commit message:
Fix for emboss_format_corrector.py. Datatypes should be changed before the job is run. |
|
modified:
emboss_5/emboss_format_corrector.py |
| b |
| diff -r c159a6ded912 -r 2cf967772a40 emboss_5/emboss_format_corrector.py --- a/emboss_5/emboss_format_corrector.py Wed Jun 19 12:22:14 2013 -0400 +++ b/emboss_5/emboss_format_corrector.py Fri Oct 11 14:10:00 2013 -0400 |
| b |
| @@ -1,12 +1,9 @@ #EMBOSS format corrector import operator -#from galaxy import datatypes -#Properly set file formats after job run -def exec_after_process( app, inp_data, out_data, param_dict,tool, stdout, stderr): #Properly set file formats before job run -#def exec_before_job(trans, inp_data, out_data, param_dict,tool): +def exec_before_job( app, inp_data=None, out_data=None, tool=None, param_dict=None ): #why isn't items an ordered list? items = out_data.items() #lets sort it ourselves.... |