| Previous changeset 3:b1e25f9b5eab (2016-03-15) Next changeset 5:1eb21dccc2fa (2016-06-02) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit f33b04533bca91242b8a0a4077e1d593f5a874e0 |
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modified:
hisat2.xml test-data/hisat_output_1.bam test-data/hisat_output_2.bam test-data/hisat_output_3.bam tool_dependencies.xml |
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| diff -r b1e25f9b5eab -r 2d449a1bb5ab hisat2.xml --- a/hisat2.xml Tue Mar 15 13:04:50 2016 -0400 +++ b/hisat2.xml Tue Apr 19 18:09:15 2016 -0400 |
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| @@ -1,13 +1,12 @@ <?xml version="1.0"?> -<tool id="hisat2" name="HISAT2" version="1.0.1"> +<tool id="hisat2" name="HISAT" version="2.0.3"> <description>A fast and sensitive alignment program</description> <macros> <import>hisat2_macros.xml</import> </macros> <requirements> - <requirement type="package" version="2.0">hisat</requirement> <!-- Conda dependency --> - <requirement type="package" version="2.0.0beta">hisat2</requirement> + <requirement type="package" version="2.0.3">hisat2</requirement> <requirement type="package" version="1.2">samtools</requirement> </requirements> <stdio> @@ -252,7 +251,7 @@ <param ftype="fasta" name="history_item" value="phiX.fa" /> <param ftype="fastqsanger" name="reads_f" value="hisat_input_1_forward.fastq" /> <param ftype="fastqsanger" name="reads_r" value="hisat_input_1_reverse.fastq" /> - <output file="hisat_output_1.bam" ftype="bam" name="output_alignments" /> + <output file="hisat_output_1.bam" ftype="bam" name="output_alignments" lines_diff="2" /> </test> <test> <param name="input_format_selector" value="fastq" /> @@ -264,7 +263,7 @@ <param name="trim_five" value="15" /> <param ftype="fastqsanger" name="reads_f" value="hisat_input_2_forward.fastq" /> <param ftype="fastqsanger" name="reads_r" value="hisat_input_2_reverse.fastq" /> - <output file="hisat_output_2.bam" ftype="bam" name="output_alignments" /> + <output file="hisat_output_2.bam" ftype="bam" name="output_alignments" lines_diff="2" /> </test> <test> <param name="input_format_selector" value="fastq" /> @@ -279,7 +278,7 @@ <param name="paired_end_options_selector" value="advanced" /> <param name="no_mixed" value="True" /> <param name="no_discordant" value="True" /> - <output name="output_alignments" ftype="bam" file="hisat_output_3.bam" /> + <output name="output_alignments" ftype="bam" file="hisat_output_3.bam" lines_diff="2" /> </test> </tests> <help> |
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| diff -r b1e25f9b5eab -r 2d449a1bb5ab test-data/hisat_output_1.bam |
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| Binary file test-data/hisat_output_1.bam has changed |
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| diff -r b1e25f9b5eab -r 2d449a1bb5ab test-data/hisat_output_2.bam |
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| Binary file test-data/hisat_output_2.bam has changed |
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| diff -r b1e25f9b5eab -r 2d449a1bb5ab test-data/hisat_output_3.bam |
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| Binary file test-data/hisat_output_3.bam has changed |
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| diff -r b1e25f9b5eab -r 2d449a1bb5ab tool_dependencies.xml --- a/tool_dependencies.xml Tue Mar 15 13:04:50 2016 -0400 +++ b/tool_dependencies.xml Tue Apr 19 18:09:15 2016 -0400 |
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| @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> - <package name="hisat" version="2.0"> - <repository changeset_revision="c65f00072e57" name="package_hisat_2_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="hisat" version="2.0.3"> + <repository changeset_revision="dc03603edd43" name="package_hisat_2_0_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="samtools" version="1.2"> <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |