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GRsetFromGEO/GRsetFromGEO.xml |
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| diff -r c7bab1a516ce -r 2d4a97506931 GRsetFromGEO/GRsetFromGEO.xml --- a/GRsetFromGEO/GRsetFromGEO.xml Thu Apr 13 10:41:44 2017 -0400 +++ b/GRsetFromGEO/GRsetFromGEO.xml Thu Apr 13 11:01:46 2017 -0400 |
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| @@ -1,33 +1,36 @@ <tool id="GRset" name="GRsetFromGEO" version="1.16.2"> + <description> + Reading Illumina methylation array data from GEO. + </description> <requirements> - <requirement name="package_r_3_2_1" type="package" version="3.2.1">R</requirement> -</requirements> + <requirement type="package" version="3.2.1">R</requirement> + </requirements> <stdio> <exit_code range="1:" /> </stdio> <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> <inputs> - <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> + <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> </inputs> <outputs> - <data format="RData" name="output" label="GenomicRatioSet.Rdata"/> + <data format="RData" name="output" label="GenomicRatioSet.RData"/> </outputs> <tests> <test> <param name="test"> <element name="test-data"> - <collection type="data"> + <collection type="data"> <element name="GSE" value="GSE51547"/> </collection> </element> </param> - <output format="RData" name="output" label="test-data/GenomicRatioSet.Rdata"/> + <output format="RData" name="output" label="test-data/GenomicRatioSet.RData"/> </test> </tests> <help> Reading Illumina methylation array data from GEO. </help> <citations> -Aryee, Martin J., et al. "Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays." Bioinformatics 30.10 (2014): 1363-1369. +Aryee, Martin J, et al "Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays" Bioinformatics 3010 (2014): 1363-1369 </citations> </tool> |