| Previous changeset 9:cf13a1e03e5b (2021-03-15) Next changeset 11:0d243f458b53 (2021-07-26) |
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Commit message:
"planemo upload commit 9fa4b0e3863e3177848adddf23f6278d00fdaea1" |
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modified:
macros.xml test-data/genome_results/full_table test-data/genome_results/missing_buscos_list test-data/genome_results/short_summary test-data/genome_results_metaeuk/full_table test-data/genome_results_metaeuk/missing_buscos_list test-data/genome_results_metaeuk/short_summary test-data/genome_results_metaeuk/summary.png test-data/proteome_results/full_table test-data/proteome_results/missing_buscos_list test-data/proteome_results/short_summary test-data/proteome_results/summary.png test-data/transcriptome_results/full_table test-data/transcriptome_results/missing_buscos_list test-data/transcriptome_results/short_summary test-data/transcriptome_results/summary.png |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff macros.xml --- a/macros.xml Mon Mar 15 21:27:17 2021 +0000 +++ b/macros.xml Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <macros> - <token name="@TOOL_VERSION@">5.0.0</token> + <token name="@TOOL_VERSION@">5.2.1</token> <token name="@VERSION_SUFFIX@">0</token> <xml name="citations"> |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/genome_results/full_table --- a/test-data/genome_results/full_table Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/genome_results/full_table Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) # Busco id Status Sequence Gene Start Gene End Strand Score Length OrthoDB url Description 774at6656 Missing 980at6656 Missing |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/genome_results/missing_buscos_list --- a/test-data/genome_results/missing_buscos_list Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/genome_results/missing_buscos_list Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) # Busco id 100070at6656 100136at6656 |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/genome_results/short_summary --- a/test-data/genome_results/short_summary Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/genome_results/short_summary Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,6 +1,6 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) -# Summarized benchmarking in BUSCO notation for file /tmp/tmp7tgu744e/files/3/3/6/dataset_336adf79-955a-4ca8-aeda-96fc1fce9a4c.dat +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) +# Summarized benchmarking in BUSCO notation for file /tmp/tmpctznxi43/files/9/e/c/dataset_9ec37448-e146-4536-b66f-9082e1734ea4.dat # BUSCO was run in mode: genome # Gene predictor used: augustus @@ -13,3 +13,12 @@ 0 Fragmented BUSCOs (F) 1012 Missing BUSCOs (M) 1013 Total BUSCO groups searched + +Dependencies and versions: + hmmsearch: 3.1 + makeblastdb: 2.12.0+ + tblastn: 2.12.0+ + augustus: 3.4.0 + gff2gbSmallDNA.pl: None + new_species.pl: None + etraining: None |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/genome_results_metaeuk/full_table --- a/test-data/genome_results_metaeuk/full_table Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/genome_results_metaeuk/full_table Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) # Busco id Status Sequence Gene Start Gene End Strand Score Length OrthoDB url Description 774at6656 Missing 980at6656 Missing |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/genome_results_metaeuk/missing_buscos_list --- a/test-data/genome_results_metaeuk/missing_buscos_list Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/genome_results_metaeuk/missing_buscos_list Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) # Busco id 100070at6656 100136at6656 |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/genome_results_metaeuk/short_summary --- a/test-data/genome_results_metaeuk/short_summary Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/genome_results_metaeuk/short_summary Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,6 +1,6 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) -# Summarized benchmarking in BUSCO notation for file /tmp/tmp7tgu744e/files/3/e/e/dataset_3ee78f14-2ccd-4666-af87-075e725e09bd.dat +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) +# Summarized benchmarking in BUSCO notation for file /tmp/tmpctznxi43/files/9/6/4/dataset_96441510-fb85-41dd-a4ce-8a20d74173a9.dat # BUSCO was run in mode: genome # Gene predictor used: metaeuk @@ -13,3 +13,7 @@ 0 Fragmented BUSCOs (F) 1011 Missing BUSCOs (M) 1013 Total BUSCO groups searched + +Dependencies and versions: + hmmsearch: 3.1 + metaeuk: 4.a0f584d |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/genome_results_metaeuk/summary.png |
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| Binary file test-data/genome_results_metaeuk/summary.png has changed |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/proteome_results/full_table --- a/test-data/proteome_results/full_table Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/proteome_results/full_table Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) # Busco id Status Sequence Score Length OrthoDB url Description 774at6656 Missing 980at6656 Missing |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/proteome_results/missing_buscos_list --- a/test-data/proteome_results/missing_buscos_list Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/proteome_results/missing_buscos_list Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) # Busco id 100070at6656 100136at6656 |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/proteome_results/short_summary --- a/test-data/proteome_results/short_summary Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/proteome_results/short_summary Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,6 +1,6 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) -# Summarized benchmarking in BUSCO notation for file /tmp/tmp7tgu744e/files/8/e/0/dataset_8e0c0f40-2615-49a6-a2aa-9e5ad5f5a163.dat +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) +# Summarized benchmarking in BUSCO notation for file /tmp/tmpctznxi43/files/8/5/3/dataset_853c93b4-f61b-4a14-a96c-ade0e2f5bbbd.dat # BUSCO was run in mode: proteins ***** Results: ***** @@ -12,3 +12,6 @@ 0 Fragmented BUSCOs (F) 1012 Missing BUSCOs (M) 1013 Total BUSCO groups searched + +Dependencies and versions: + hmmsearch: 3.1 |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/proteome_results/summary.png |
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| Binary file test-data/proteome_results/summary.png has changed |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/transcriptome_results/full_table --- a/test-data/transcriptome_results/full_table Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/transcriptome_results/full_table Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) # Busco id Status Sequence Score Length OrthoDB url Description 774at6656 Missing 980at6656 Missing |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/transcriptome_results/missing_buscos_list --- a/test-data/transcriptome_results/missing_buscos_list Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/transcriptome_results/missing_buscos_list Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,5 +1,5 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) # Busco id 100070at6656 100136at6656 |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/transcriptome_results/short_summary --- a/test-data/transcriptome_results/short_summary Mon Mar 15 21:27:17 2021 +0000 +++ b/test-data/transcriptome_results/short_summary Thu Jul 15 13:09:00 2021 +0000 |
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| @@ -1,6 +1,6 @@ -# BUSCO version is: 5.0.0 -# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of species: 90, number of BUSCOs: 1013) -# Summarized benchmarking in BUSCO notation for file /tmp/tmpn3gmbt1s/files/4/1/3/dataset_413f631e-7113-4502-9085-5f25549301e4.dat +# BUSCO version is: 5.2.1 +# The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) +# Summarized benchmarking in BUSCO notation for file /tmp/tmpctznxi43/files/b/5/f/dataset_b5fc3813-7cbb-4aa0-b30c-dc2a6e85905d.dat # BUSCO was run in mode: transcriptome ***** Results: ***** @@ -12,3 +12,7 @@ 0 Fragmented BUSCOs (F) 1012 Missing BUSCOs (M) 1013 Total BUSCO groups searched + +Dependencies and versions: + hmmsearch: 3.1 + metaeuk: 4.a0f584d |
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| diff -r cf13a1e03e5b -r 2dd755c1c6ff test-data/transcriptome_results/summary.png |
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| Binary file test-data/transcriptome_results/summary.png has changed |
