| Previous changeset 3:88d274322340 (2023-03-15) Next changeset 5:02bbace216f2 (2024-11-22) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/krakentools commit f37828f1d6b9c53cc2e7ea334ee9a2fb8dbd8711 |
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modified:
macros.xml |
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added:
test-data/extract_kraken_reads/R1.fq |
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| diff -r 88d274322340 -r 2deaada69b14 macros.xml --- a/macros.xml Wed Mar 15 18:17:44 2023 +0000 +++ b/macros.xml Tue Jun 20 20:04:33 2023 +0000 |
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| @@ -1,7 +1,7 @@ <?xml version="1.0"?> <macros> <token name="@TOOL_VERSION@">1.2</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE@">21.01</token> <xml name="biotools"> <xrefs> |
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| diff -r 88d274322340 -r 2deaada69b14 test-data/extract_kraken_reads/R1.fq --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/extract_kraken_reads/R1.fq Tue Jun 20 20:04:33 2023 +0000 |
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| b'@@ -0,0 +1,2240 @@\n+@C_II_XVIIIb-101/1\n+AGTGACATAGTAATGGGGGAGAGGAGGCGCATTACAGTCTTAGGAACGCAACTTACTTCCTGAAGGGATTGTACTTAGCAATGGTATGTCTCTTCTCTATCTTAGTAGAGGTGACTTCATGATCAGCGGTCACTGCGACAGCGCGCTGAG\n++\n+ECGG#*#5GFGGGCG##>GG#FG#GCCGG#<#GGGG:GGGDGD:CGDFDG+FFGGGAGGGGGGGGG9GGGGGGGG,GGGGGGC<CGGFGG9FEGGGGGGGGCGGGFGGCGDGFGGGGGGGGGGGGFGFGCDGFGEGGGGGGGGGGGCGGG\n+@C_II_XVIIIb-99/1\n+ATCCAATCACCCATTAGTCTGCTCTATTAAGTGTTCGCTGACGCTAGCAGACTATGCCCGGAACAGAAGCTGGTCACCTTTGACAGGGGGTAGGAAGATACTAGGCGTATCTAATCCTGACACCATAGAACTTGTGGAAGGAGAGATTCT\n++\n++#GFGGGGG@CG7G#GGG<G#GG:BG#GG#GGAGFCEC<8GGGGDGGGGGGGGGCEDD7GFGGGGEGGGGGGGGGGGGGGGFGFGGGGGGG@GGGGGGGFGGCGFGGGEGFGFGGGEGGGGGGGFGFBFGGGGGGGFGGGGGGGGGGGAG\n+@C_II_XVIIIb-97/1\n+TGAGTCATGCATAGAGTACGACCCCATTACCAATCTAAGCATGTTCTTAAAGGACAAGGCAATCGCACATCCGAAAGATAACTGGCTCGCCTCATTCAGGCGGAACCTCCTCTCTGAGGACCAAAAGAAACAGATAAAAGAGGCGACCTC\n++\n+?GGC#GG8F*GGG88E:F#FG?GG*#GGGGG,FGGGG=G7EGG,,?GFGGGCGG@+G<GGGGGAECGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGFF:GGGGGGGGGGGGE>GCGGGFGCGGGGGGGGGGGGFGCGGGGGGGG\n+@C_II_XVIIIb-95/1\n+GTCATATTCCACACTGGAGCTCATGAAAATTCTTTCAATCTCTAGCGGAAAGTTGATCGGCCAATCAGTGGTTTCTTATGATGAAGATACCTCTATAAAGAATGATGCTATAATAGTGTATGACAACACACGAAATTGGATCAGTGAGGC\n++\n+GGFGE#C#=GCECGDGGGGGG#GCFGG#G*F@GGGG5EGFGGGFGCGDGGGGGGGEGGG<@GG;GFGGGGDGGGGGCGGGGGGGGGG6G8CGGGGGGEGGCGGGGGFGGGGCGFGGGDGGFG,>GGGFGFGGGGGGG=GGGGGGFGFCG@\n+@C_II_XVIIIb-93/1\n+GTCGCAAGTTGATCTGATAGCCTTTGGTTCGACCCCGGAGGAATCTCAATGTCGCAATGCAGTAATGCTACAGACCTGTGGGGCACTACAGATGTGATATATCCCACTGCTCTATCTGAAGTCAGGTCGCTTTCTTCTGCATTCTCTCTC\n++\n+F@##G#GG>DG**EC#65FG#/FFF#GAC#GGEGGFGGCCGGFACGCGGGF*GGGFG+GD;G<GE9GBGGFGGGGGFGFCGGCGGGGFGFGGGGEGGG+FGFGGGGGEGGG,GGGGCCFGGGGGGGGGGGFGF<FCGGGCGGCECGCFGG\n+@C_II_XVIIIb-91/1\n+CTTCGCCTGCCTTCCTGCATTACTATCTAACTTGGTAATAGTCTATCTTGATTGCTTATAGCTAGTTCACCTGTCTATCTAATTAGAAAAAACACGGGTAGAAGAGTCTGGAACCTAACTAGCACATTCTGAACGCAATATGGGCTCCAA\n++\n+#GCGECCEG*#G*GGF#GEGGGGFGG###CG,#G#GEGG=G@GG9GFCFGG>GGGGFGGGGGG@GGGCCGFGGGGGGG<GGGGBGGGG9GC,GGCGGG3GGFGFFGCGGFGGDAGGG5GG3GG*EGGGGGFGFGDGGG=GGGGGGFFGGG\n+@C_II_XVIIIb-89/1\n+GGCTATTGCATGTCGGCCTGATATGGCAGTGGAGAAGGACACTGTCCGTGCATTAATCACCTCTCGCCCAATGCATCCAAGCTCCTCAGCTAAGCTCCTGAGCAAGCTGGATGCAGCCAGGTCGATTGAAGAGATCAGGAAGATCAAACG\n++\n+##G#G#GG7G#CF#GGF#FGGCG3=GE=6<G@CCC4GEGGDG4GGGFGGG6GCGGGE:GGFCGGG?GGGGGGGGFFFGGCGGGGGFGGGGCGGGFGGGFGGGGGGG=GGG,GGGGGGGGEGGGGGBGG8GGGGGFGEFGC@GGGGGGGFF\n+@C_II_XVIIIb-87/1\n+TTTACCAAGAGTCCCAAATCATGATATATATATTGTCAGTGCTAGGGGGGGCATTGAGGGATTATGCCAGAAGCTATGGACAATGATCTCAATTGCTACAATCCAACTTGCTGCAGCAAGATCACACTGTCGTGTTGCCTGCATGGTACA\n++\n+C>,##GGGGGEGGGG?FGG##FGF#GFG+GGG*GGCGFGGDF?GGGCGGGGGF<CFGGG7GGGGGCGFGGGG>GGGGGGFGGGGGEFGGDGFGGGGGGGDGGGGEGGGGG1*G2GGFFG:GGGF8FGG9GGGGGFGGGGGGGGGGGGGGF\n+@C_II_XVIIIb-85/1\n+TAGGTTGAACAAGCTGCAAGGGCACCCAGACGTCGGGGATGGAGAGACCCAATTCCTAGATTTTATGAGAGCAGTGGCGAACAGCGTGCGAGAAGCGTCAAATCCCGCACAAAACGTCACCCCTCTAGAGCCTCCCCCAACTCCTGGGCC\n++\n+G#FG#GGG<GGGGGGG:GFGCF*##G+GG*GG9CEE8GGFGGCGD=GGG,GDGGFGGG9GGG=GCGDFGAGGGGE+GGGGGGGFGFG4GGGGGGGG<G<GGGGGGDGGGGCGGCGGGGGDGGGCGGGGGG9GGGGCCGG<GGGGGGGCGF\n+@C_II_XVIIIb-83/1\n+AGGTAGTTTCCCTTGGCAAGAATCAGCAAGATGCCCTAACTCATGCGTCACTGGAGTCTATACTGATCCGTATCCCTTAGTCTTCAATCGGAATCATACCCTACGAGGGGTATTCGGGACAATGCTTGATGATGGACAGGCAAGACTCAA\n++\n+GG<B9GG##F#GGFG#CGGG#GG#CG9G#GGGG+CGGG<GG@GFGGGG8CG9GG::FFGF@GFGGGGGGGGG<GEGFGGGGFGGGGGGGGFGGGGGEGGGGGGGGGEGGGFF,GGGCGGGGGGGGGGG:GGGG84FGFEGGGGG8GGDGF\n+@C_II_XVIIIb-81/1\n+GGCCGCCGGCCCACTGAGTGGGGCCGCCTTCTCGGGTGCGGACGGCTGTTTGTCTGGTCTGGCTTGTTGGTCGGGGGCGTCCTGGCCGGCATTTGATTGGACACTCCCGTGCTTCTCCCATGCAGTGCTCAGAGCCTTGGTCTTGCCTTG\n++\n+0GGFG#GG9##GG#GG#?C#DEG@DGGEG#BGG#FGC>GGCGCGGGGG*G7GD6GGGCGGFFGEGD,GFG8GGEGGGGGGGGFGGGGGCGFGGGG,EGGGGG+3GGGGFGGGG7G:*DGEGGGFGFFGGGGFGGGGGGC*GGGGGGGGGG\n+@C_II_XVIIIb-79/1\n+GCTTGTAAAGCATGGACAGAAGATAGTTGCTTGCTCCGGTATTGAGCTGTATGTCGCCGGCCTCGCCTGCAGCCTGGGTGGGAGAGGACTCGGTGGATGTGGCCGGCGGGTCACTGTGTTGGGCCGCCTGCTCGGGTGCGGACGGCTGTT\n++\n+GGGFFG#GE#:<E:#GGGG#GGF#GG7;GGGGGGGFCGCG*GGGGG>GG7GGG@GG<GGGGG>GG:9C9FG;GGGGGGGFGG,GGGGGGGGG?GG8GGEGGGGGGCGDGGGGGGG8FGG:GEGGGDGDGGGGGGGFGGGFGGGGGGGGFG\n+@C_II_XVIIIb-77/1\n+TGCTAGGAAGATGAAAGCACGTAACCTTCTCATCTCCACTGTCACAC'..b'3#GGGAC:EDF#GGGGGGFGFAGGGFGGGGGAGGGGFCGGGCGGGG*GEFDGG+FFGGCFGCG@BFGGGF*GGGGCGGGGGGGFGGGGGGGGGGGGFGFGGFGG<EGGGFGGDGGCFEGGGGGGGGG\n+@HQ630064-23/1\n+TAAATGTCTAGCCAACCCCACACAAGAACGCGATAAATACACACCACTCAATTACTCATTAGTCTTTCTTTATTCAAACATTTTTACATTTGCACTTTCCAAAACTCGATCGGAAACTGTCAGAAGAGTCTCTGATGAGATTAGTTTGTC\n++\n+GFGGGGGGGG<CC<#CC#C7#GGGFGG*GGF+5#G;GGGG;CGGG:GG?@+@GG?FGGGCGGFG:CGGGGGGGGDCGGGG=GGGGGEGGGGGGGGG7FGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGG@GG,G,GGGGGGCGGGGFGE@\n+@HQ630064-21/1\n+CATAATATTTGTTGACAAGGGATAGATTATCGGTATTGTGGTAGGGGCACTTGTTGGATTGGTTGCTCTATGGAGTGCCATCAGGGCTATATATAAATTCTGCCTCAGCTCGGCAACGCAATTTAGACGTGTACGGCTACCGTCTGACGA\n++\n+CGGGGGG#GG#GGF7F8EG<#GGG#GG#GGGGDEGCEGF<GFGGGBG:GGFGGGGGGGGGGGFGGCGCGFFGGCGGFGGGGGGBGFGGGGCGGGCGGCGGGEGCGGGGGFGGC+G=FGGEDGGBGGGGGGGFGEGGGGGCFGGGGGGGGE\n+@HQ630064-19/1\n+GTTCATGATAGCAAGGGAATGTGGGAGCTACGGAAGAGCGTGTTCTGCGGCCGGTCTAACTCAGAGAGTAAATACGAAGCCCTTCCAACTGGGCGGTGCCTGCCCGTAGATGATCGAAAAGTACAGTCGGCTGTGAAGCTTATTAAAATC\n++\n+EGGFG9EG5GGGGA:G#GGF#G#G#G9GGE?##GGGCGGGGGBGGGG>CEGFGGG+GCG9GCCG8GGEGCGGGGGGDGGGCGGCEGCGGGGDCGGEGCGEF=G@GCG7GGGCF8FGGGCFGGGGGEGFGDGGFEG9GG@GGGGGGGG9:A\n+@HQ630064-17/1\n+AAATCCTCGTAGATTCAACAACGAGAAGAATGTTAGATGCGATGGCCCTTGTATCTTCCTTTCCAAGCGTTGCATTATTTGTTTCTTCGGGGTTACGTGGCCCCGAGCCAATAAAGAATTTCCCTGGCCTCGTTCCAAGACCATGAGAAA\n++\n+###GGGCGGG+GFFF7GFGG#8GG#G#F#G*##*GGG<GGGGGEGGGCGFGGGGGGGGAGGFGGGGGEGDGGCGGGG=GGGGGGGGGCFGGGGGEGGGGGGGGG>GGGGGGG:GGGGGGGCGG>@GG:GCGFGGCG?GFGGGGGGGG:GG\n+@HQ630064-15/1\n+GATTTTTTTAAGGGTGGCCTACGACCTCTGTGTTAGACATCAAATAGCGACAACCCGTACTCGTGATATTTATGTTGTAACATATAAGAACAAGACACTCGATCTATCTACATTGCCCCCGTCTGATGCGGCTGCACTTCAAGATACAAT\n++\n+F2GGGFB##G#GG#GCFG:GF#GG##GGFG#G*GGAF+CGGF8GGGGGF:GGCEGFFG,GG3GGGGGFGCGCGGGGGGGGGGGGGGG@<GGGGGGG8GFGG7GGGFGGGGEC<GGGFGGGGGGGGGGGGGGDGG8GGGCGGGGGCFFGGC\n+@HQ630064-13/1\n+CGTCTTCGCTCGGCCGGCCCAATGACCATCCTGCATTTTTGCTGTTCGCGCGATTTGCGGTAGGGAGTTGCAACTTGAATTCACAAACGTTACAAACAAAGGGGCAGCTGTTGAGGTATCCGGAAGTCTGTAGGTCATTCCAGTGCTCGG\n++\n+#FG#FGGDFGBG#GC###G#0=CEF:GEFGGG#FGGFF1G+FG9E>CGCGGF5GGGAGGGCG>FDGGG8GG<GECGGF*G>GGCGGGG9GCEFEGGGGGGGG7GGEGGGGGGGGGFGGGGGGCGAGGGGGGGGGCGDGGGGGFGGGGEDG\n+@HQ630064-11/1\n+GAAAGAAAGAAAGGAAAAGGCCTCAAAGCAAATTTTGTAGCTTAAAAAAGAGGGGGCCCTAAAGAAGAAGCAACATCGTCTCGGGCTGTGTTTCCGACGTTGGGGTGCATTATGCGATTTTACTACCAGTGTTTGGTGTGGTGTGGTAAG\n++\n+CGGGGGG<GG5##G7GGG,GGGFDG#GGFGGGG8GEGGGGFGGGG8FDGG,GFGGGGGG8GFGGGGGGGGCFEGGG9BGGGGFGGCG@GGCGG,<GGGGGG@GG<GGCGFGGFFGGGGGGGGGGGGGGGGCGGGFGGGGGGGGGGEGFGG\n+@HQ630064-9/1\n+CAGGAGACGCCTCGCCATATTCATAGTTTGTGTCGAAAACCGAGAATTGAGCGCCATCGCGCTATCCATAGGATACCCGCGCGGAATCAGCGTGCGCAACACTGGTCCATTTAGTTTGAACAACGGTGATCTCGTGTCTTTACTGCCACC\n++\n+GGGGG,GG#:#G##GGG#<EG#FGGCGC:FGG,8G=GGGGGGBG8GGG;9FGAGGG@G>FEGFGGGGFFGGGGGGGGGGGGGGGGGGGGGGGFC@AGGGFGBEGGGGGGCGFGG,CGGGGFGGGGGGGFGGEGGGGGGGGGGGCGGFGGG\n+@HQ630064-7/1\n+GCTCCTAAGTCACCGCGCGGTTATTCTGGAAGACCAGTTTATTTCGTCCTCTATCATGAAGCGAGTGAGCTTATCTCCAATCATGCTATTTCCGAAGAATACATTCATGCCCGGGTACTGGTCCCCGGATCCCCAGCCTGGTCGGTACCG\n++\n+FGG##<FFGGGD#GG#,FG=CGGG#GGA8#GGGFGGGFGGGG>5GG;GCGGGGGGGG2;GCGGG@FGGGDGGCGGGGGFGGF:G>GFGGGFG8GGCCGGGGGGGFEGG*GEGGFGGGGGGGGC,GGEGFEGGGGGGEGGEGGGGGGGGGG\n+@HQ630064-5/1\n+CTCAGCGTGGAAAGCACCTCTTCGCAAAACGTAAGTCATGAAACCAATATTCTGTTATAAATTTTGGGGTGGGATTAGGTGGGCTGTCATTAGAGGGGACCACGAAATATCCTTTTGCATGGTGTATCGTGCAAAAATATGACTGTGGGC\n++\n+G#GG>FGECF:GGG#GGGGGG+,GEGGGGGGFGFCGG@GFGG7@G>4E8GGG*,GGGGGCGGGCGGCG<GEGEFGGGG<GGGCGGGAGGAG,GFEGFGGFGGGCGGGGGGGGGGGGGCG,FG9GFFGGGGGGGGGGGGGDGGGGGGF@GG\n+@HQ630064-3/1\n+AGGACTGTCGCTCATATCTTGCGTACTGTGTCTTATTTACTCGTGTTGTCTTTCCGCAGGGAATGCGCGGTTCGAGTAGGCCGTGGTTTGCGGCCGTTCTCGGATAAGCACAAAATATCGCCCTACTCGTGTGTCAAAAAGGAAAAGTCT\n++\n+GC:GG#GG#GGGGGG9GGGGG#G#GGGG#G#GCDG,GGGG:GFGGF*GFGGC9GEGGEGGCGGGGGGGGEGGGFFCGFCGEG=FFFFGGGFGGGFFGGGC,GGG,GGGEGGGGGG9GGGGG9F5GGGGF,GGGC7G*GGFGGGGGGGGEG\n+@HQ630064-1/1\n+GTGGGATGTCATTTGAAGGGACCACGAATTATCCTTTTGCATGGTGTATCGTGCAAAAATATGACTGTGGGCTTCGAATAATTCCCCCATACAGTCAAGAGTATGGTCTGCTGTTATGGGTGAACATGAAGCTCACAAAACGATAAACCA\n++\n+GAFG9#GGCGGGGGGD#CGG,CD+CGG##GGGGFG?GG9GGGGEGGGGGGG,GGDCGGEGGDGEGGGFGGFCF=GGG7EGGGGGGGGGGGEGGG@GGGG<GCFFFGGGGCCEGGGGCGGGGGGGGGGGGFGGGGCGGGGGAGEGGGECGG\n' 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