| Previous changeset 4:cd336e593a92 (2017-09-07) |
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Commit message:
planemo upload |
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modified:
splice_trap.xml |
| b |
| diff -r cd336e593a92 -r 2ebca9da5e42 splice_trap.xml --- a/splice_trap.xml Thu Sep 07 16:53:12 2017 -0400 +++ b/splice_trap.xml Thu Sep 07 17:39:24 2017 -0400 |
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| @@ -14,21 +14,21 @@ -s $read_size $output1 $output2 </command> <inputs> - <conditional name="input_type_conditional"> - <param name="spliceTrap_input_type" type="select" label="Input Type" help="Select between paired and paired collection"> - <option value="paired" selected="true">Paired</option> - <option value="paired_collection">Paired Collection</option> - </param> - <when value="paired"> - <param format='fastq' name='input_1' type='data' label="FASTQ file, reverse reads" /> - <param format='fastq' name='input_2' type='data' label="FASTQ file, forward reads" /> - </when> - <when value="paired_collection"> - <param format="fastq" name='input' type="data_collection" collection_type="paired" label="Select a paired collection" help="Specify paired dataset collection containing paired reads"/> - </when> - </conditional> - - <param name='read_size' type='integer' value='50' label="Read size" /> + <conditional name="input_type_conditional"> + <param name="spliceTrap_input_type" type="select" label="Input Type" help="Select between paired and paired collection"> + <option value="paired" selected="true">Paired</option> + <option value="paired_collection">Paired Collection</option> + </param> + <when value="paired"> + <param format='fastq' name='input_1' type='data' label="FASTQ file, reverse reads" /> + <param format='fastq' name='input_2' type='data' label="FASTQ file, forward reads" /> + </when> + <when value="paired_collection"> + <param format="fastq" name='input' type="data_collection" collection_type="paired" label="Select a paired collection" help="Specify paired dataset collection containing paired reads"/> + </when> + </conditional> + + <param name='read_size' type='integer' value='50' label="Read size" /> </inputs> <outputs> <data format="txt" name="output1" /> @@ -41,6 +41,17 @@ <output name="output1" file="output1.txt"/> <output name="output2" file="output2.txt"/> </test> + <test> + <param name="fastq_input"> + <collection type="paired"> + <element name="forward" value="input1.fastq" /> + <element name="reverse" value="input2.fastq" /> + </collection> + </param> + <param name="input_type" value="paired_collection" /> + <output name="output1" file="output1.txt"/> + <output name="output2" file="output2.txt"/> + </test> </tests> <help> **SpliceTrap** |