| Previous changeset 2:05c394313b1c (2018-11-06) Next changeset 4:ce02f513e598 (2021-03-19) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaspades commit 92f173d5036d86d6fd689c65b5a0fc2586d37697" |
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modified:
metaspades.xml |
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| diff -r 05c394313b1c -r 2ecf5a570907 metaspades.xml --- a/metaspades.xml Tue Nov 06 12:21:15 2018 -0500 +++ b/metaspades.xml Fri Jan 15 12:28:26 2021 +0000 |
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| @@ -8,8 +8,13 @@ </stdio> <command> <![CDATA[ + + if [[ -n \$GALAXY_MEMORY_MB ]]; then + GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 )); + fi && + ## A real command looks like: spades.py -k 21,33,55,77,99,127 --careful -1 Y.fastq.gz -2 X.fastq.gz -t 24 -o output - spades.py -o . --disable-gzip-output --meta $onlyassembler -t \${GALAXY_SLOTS:-16} + spades.py -o . --disable-gzip-output --meta $onlyassembler -t \${GALAXY_SLOTS:-16} -m \${GALAXY_MEMORY_GB:-250} #if not $kmer_choice.auto_kmer_choice: -k "$kmer_choice.kmers" #end if |