| Previous changeset 25:689075526eb3 (2016-06-23) Next changeset 27:492505471c3f (2016-06-23) |
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Commit message:
planemo upload |
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modified:
data_manager_gene_annotation/data_manager/data_manager.py |
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| diff -r 689075526eb3 -r 2f03bb5788e1 data_manager_gene_annotation/data_manager/data_manager.py --- a/data_manager_gene_annotation/data_manager/data_manager.py Thu Jun 23 15:34:25 2016 -0400 +++ b/data_manager_gene_annotation/data_manager/data_manager.py Thu Jun 23 15:38:26 2016 -0400 |
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| @@ -46,14 +46,13 @@ % e) os.remove(file_name) - return os.path.join(os.getcwd(), file_name) + return file_name def main(args): # Attempt to download gene annotation file from given url - gene_annotation_file_path = url_download( - "http://www.scott-ouellette.com/gene_annotations/chr1-hg19_genes.gtf", args.name) + gene_annotation_file_name = url_download(args.url, args.name) # Update Data Manager JSON and write to file data_manager_entry = { @@ -61,7 +60,8 @@ 'gene_annotation': { 'value': str(datetime.datetime.now()), 'dbkey': str(args.name), - 'name': gene_annotation_file_path.split(".")[0] + 'name': gene_annotation_file_name.split(".")[0], + 'path': gene_annotation_file_name } } } |