| Previous changeset 2:075ac65129b5 (2016-02-18) Next changeset 4:732726f3f986 (2016-03-10) |
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Commit message:
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 2e8510e4f4015f51f7726de5697ba2de9b4e2f4c |
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modified:
bamCompare.xml deepTools_macros.xml test-data/computeMatrix_result1.gz test-data/computeMatrix_result2.gz test-data/computeMatrix_result3.gz test-data/heatmapper_result1.png test-data/heatmapper_result2.png test-data/plotCorrelation_result1.png test-data/plotCoverage_result1.png test-data/plotPCA_result1.png test-data/profiler_result1.png test-data/profiler_result2.png |
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added:
test-data/bamCoverage_result5.bw test-data/heatmapper_result2.tabular test-data/plotPCA_result2.png test-data/plotPCA_result2.tabular test-data/profiler_result2.tabular |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 bamCompare.xml --- a/bamCompare.xml Thu Feb 18 11:53:00 2016 -0500 +++ b/bamCompare.xml Wed Mar 09 18:30:04 2016 -0500 |
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| @@ -70,9 +70,9 @@ </command> <inputs> <param argument="--bamFile1" format="bam" type="data" label="First BAM file (e.g. treated sample)" - help="The BAM file must be sorted."/> + help=""/> <param argument="--bamFile2" format="bam" type="data" label="Second BAM file (e.g. control sample)" - help="The BAM file must be sorted."/> + help=""/> <param argument="--binSize" type="integer" value="50" min="1" label="Bin size in bases" |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 deepTools_macros.xml --- a/deepTools_macros.xml Thu Feb 18 11:53:00 2016 -0500 +++ b/deepTools_macros.xml Wed Mar 09 18:30:04 2016 -0500 |
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| @@ -72,12 +72,12 @@ </xml> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">2.1.0</token> + <token name="@WRAPPER_VERSION@">2.2.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="2.7.10">python</requirement> <requirement type="binary">@BINARY@</requirement> - <requirement type="package" version="2.1.0">deepTools</requirement> + <requirement type="package" version="2.2.2">deepTools</requirement> <yield /> </requirements> <expand macro="stdio" /> @@ -310,13 +310,13 @@ <xml name="multiple_input_bams"> <param argument="--bamfiles" type="data" format="bam" min="1" label="Bam file" multiple="true" - help="The BAM file must be sorted."/> + help=""/> </xml> <xml name="multiple_input_bams_min2"> <param argument="--bamfiles" type="data" format="bam" min="2" label="Bam file" multiple="true" - help="The BAM file must be sorted."/> + help=""/> </xml> <xml name="multiple_input_bigwigs"> |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/bamCoverage_result5.bw |
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| Binary file test-data/bamCoverage_result5.bw has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/computeMatrix_result1.gz |
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| Binary file test-data/computeMatrix_result1.gz has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/computeMatrix_result2.gz |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/computeMatrix_result3.gz |
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| Binary file test-data/computeMatrix_result3.gz has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/heatmapper_result1.png |
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| Binary file test-data/heatmapper_result1.png has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/heatmapper_result2.png |
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| Binary file test-data/heatmapper_result2.png has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/heatmapper_result2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/heatmapper_result2.tabular Wed Mar 09 18:30:04 2016 -0500 |
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| @@ -0,0 +1,3 @@ +bin labels -0.0Kb 0.0Kb +bins 1 2 +file_0 genes 2477942.34473 2610259.65234 |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/plotCorrelation_result1.png |
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| Binary file test-data/plotCorrelation_result1.png has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/plotCoverage_result1.png |
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| Binary file test-data/plotCoverage_result1.png has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/plotPCA_result1.png |
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| Binary file test-data/plotPCA_result1.png has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/plotPCA_result2.png |
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| Binary file test-data/plotPCA_result2.png has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/plotPCA_result2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/plotPCA_result2.tabular Wed Mar 09 18:30:04 2016 -0500 |
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| @@ -0,0 +1,3 @@ +Component bowtie2-test1.bam bowtie2-test1.bam Eigenvalue +1 -0.707106781187 -0.707106781187 6.0 +2 -0.707106781187 0.707106781187 1.23259516441e-32 |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/profiler_result1.png |
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| Binary file test-data/profiler_result1.png has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/profiler_result2.png |
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| Binary file test-data/profiler_result2.png has changed |
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| diff -r 075ac65129b5 -r 2f27bfe8b570 test-data/profiler_result2.tabular --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/profiler_result2.tabular Wed Mar 09 18:30:04 2016 -0500 |
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| @@ -0,0 +1,3 @@ +bin labels -0.0Kb 0.0Kb +bins 1 2 +file_0 genes 2477942.34473 2610259.65234 |
