| Previous changeset 4:a0ea0f7ae029 (2013-09-12) Next changeset 6:1b1af74a54ae (2013-09-12) |
|
Commit message:
Deleted selected files |
|
removed:
tool_dependencies.xml |
| b |
| diff -r a0ea0f7ae029 -r 2f7860a0017b tool_dependencies.xml --- a/tool_dependencies.xml Thu Sep 12 07:48:30 2013 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| b |
| @@ -1,33 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="spades" version="2.5.1"> - <install version="1.0"> - <actions> - <action type="download_by_url">http://spades.bioinf.spbau.ru/release2.5.1/SPAdes-2.5.1-Linux.tar.gz</action> - <!-- Copying the whole bin folder --> - <action type="make_directory">$INSTALL_DIR/bin</action> - <action type="make_directory">$INSTALL_DIR/share</action> - <action type="move_directory_files"> - <source_directory>bin</source_directory> - <destination_directory>$INSTALL_DIR/bin</destination_directory> - </action> - <action type="move_directory_files"> - <source_directory>share</source_directory> - <destination_directory>$INSTALL_DIR/share</destination_directory> - </action> - <!-- This is required to have spades accept .dat files --> - <!-- <action type="shell_command">sed -i -e "s/\('\.fa', '\.fasta', '\.fq', '\.fastq', '\.gz'\)/\\1, '.dat'/" $INSTALL_DIR/share/spades/spades_pipeline/support.py</action> --> - <!-- <action type="set_environment"> --> - <!-- <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> --> - <!-- </action> --> - </actions> - </install> - <readme> -This installs SPAdes 2.5.1. - -See manual here http://spades.bioinf.spbau.ru/release2.5.1/manual.html -See also here http://bioinf.spbau.ru/en/spades - </readme> - </package> -</tool_dependency> - |