| Previous changeset 33:bfc662f13436 (2016-06-23) Next changeset 35:355ecb4aaffd (2016-06-23) |
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Commit message:
planemo upload |
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modified:
data_manager_gene_annotation/data_manager/data_manager.py data_manager_gene_annotation/data_manager_conf.xml |
| b |
| diff -r bfc662f13436 -r 30039ecf0da0 data_manager_gene_annotation/data_manager/data_manager.py --- a/data_manager_gene_annotation/data_manager/data_manager.py Thu Jun 23 17:01:45 2016 -0400 +++ b/data_manager_gene_annotation/data_manager/data_manager.py Thu Jun 23 17:09:05 2016 -0400 |
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| @@ -63,8 +63,8 @@ 'gene_annotation': { 'value': str(datetime.datetime.now()), 'dbkey': str(args.name), - 'name': gene_annotation_file_name.split(".")[0], - 'path': gene_annotation_file_name + 'name': gene_annotation_file_name, + 'path': os.path.join(os.getcwd(), gene_annotation_file_name) } } } |
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| diff -r bfc662f13436 -r 30039ecf0da0 data_manager_gene_annotation/data_manager_conf.xml --- a/data_manager_gene_annotation/data_manager_conf.xml Thu Jun 23 17:01:45 2016 -0400 +++ b/data_manager_gene_annotation/data_manager_conf.xml Thu Jun 23 17:09:05 2016 -0400 |
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| @@ -10,9 +10,9 @@ <column name="path" output_ref="out_file"> <move type="file" relativize_symlinks="False"> <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gene_annotations/${path}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gene_annotations/${name}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gene_annotations/${path}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gene_annotations/${name}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> |