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Commit message:
planemo upload for repository https://github.com/statonlab/docker-GRReport/tree/master/my_tools/rmarkdown_fastqc_report commit ddb1f6aca7619aea2e660b1729367841b56ba4c9 |
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modified:
fastqc_report.xml |
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| diff -r 1ed094d8871c -r 3073b7bd0807 fastqc_report.xml --- a/fastqc_report.xml Mon Aug 07 21:48:49 2017 -0400 +++ b/fastqc_report.xml Tue Aug 08 09:36:33 2017 -0400 |
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| @@ -1,4 +1,7 @@ <tool id="fastqc_report" name="Fastqc report" version="1.0.0"> + <description> + Implements FastQC analysis and display results in R Markdown html. + </description> <requirements> <requirement type="package" version="1.14.1">bioconductor-deseq2</requirement> <requirement type="package" version="1.20.0">r-getopt</requirement> @@ -13,9 +16,6 @@ <requirement type="package" version="0.3.5">r-htmltools</requirement> <requirement type="package" version="0.11.5">fastqc</requirement> </requirements> - <description> - Implements FastQC analysis and display results in R Markdown html. - </description> <stdio> <regex match="Execution halted" source="both" @@ -50,4 +50,26 @@ <outputs> <data format="html" name="report" label="fastqc report" /> </outputs> + <citations> + <citation type="bibtex"> + @unpublished{andrews_s, + author = {Andrews, S.}, + keywords = {bioinformatics, ngs, qc}, + priority = {2}, + title = {{FastQC A Quality Control tool for High Throughput Sequence Data}}, + url = {http://www.bioinformatics.babraham.ac.uk/projects/fastqc/} + } + </citation> + <citation type="bibtex"> + @article{allaire2016rmarkdown, + title={rmarkdown: Dynamic Documents for R, 2016}, + author={Allaire, J and Cheng, Joe and Xie, Yihui and McPherson, Jonathan and Chang, Winston and Allen, Jeff and Wickham, Hadley and Atkins, Aron and Hyndman, Rob}, + journal={R package version 0.9}, + volume={6}, + year={2016} + } + </citation> + </citations> </tool> + + |