| Previous changeset 3:5c72eb992651 (2020-01-15) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit a6a6774ae353f915a5ca34af8f281edd91e5c665 |
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modified:
macros.xml rm_spurious_events.xml |
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| diff -r 5c72eb992651 -r 308ab6387c75 macros.xml --- a/macros.xml Wed Jan 15 17:12:22 2020 -0500 +++ b/macros.xml Fri Oct 04 08:57:01 2024 +0000 |
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| @@ -1,11 +1,13 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="@VERSION@">bctools</requirement> + <requirement type="package" version="@TOOL_VERSION@">bctools</requirement> <yield/> </requirements> </xml> - <token name="@VERSION@">0.2.2</token> + <token name="@TOOL_VERSION@">0.2.2</token> + <token name="@VERSION_SUFFIX@">2</token> + <token name="@PROFILE@">23.1</token> <xml name="citations"> <citations> <citation type="doi">10.1016/j.molcel.2013.07.001</citation> |
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| diff -r 5c72eb992651 -r 308ab6387c75 rm_spurious_events.xml --- a/rm_spurious_events.xml Wed Jan 15 17:12:22 2020 -0500 +++ b/rm_spurious_events.xml Fri Oct 04 08:57:01 2024 +0000 |
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| @@ -1,4 +1,4 @@ -<tool id="bctools_remove_spurious_events" name="Remove spurious" version="@VERSION@+galaxy1"> +<tool id="bctools_remove_spurious_events" name="Remove spurious" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>crosslinking events</description> <macros> <import>macros.xml</import> @@ -14,7 +14,7 @@ ]]></command> <inputs> <param name="events" type="data" format="bed" label="BED6 file containing alignments"/> - <param name="threshold" argument="--threshold" type="float" value="0.1" optional="true" label="Threshold for spurious event removal" help="Remove all crosslinking events that combine less reads than this fraction of the maximum number of reads at this position."/> + <param argument="--threshold" type="float" value="0.1" optional="true" label="Threshold for spurious event removal" help="Remove all crosslinking events that combine less reads than this fraction of the maximum number of reads at this position."/> </inputs> <outputs> <data name="events_filtered" format="bed"/> |