| Previous changeset 0:765f4ec851f0 (2017-05-31) Next changeset 2:7d2252852f96 (2017-06-13) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sortmerna_database_downloader commit 044a991b45c9135339daf138929887cd8e93a1bf |
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modified:
data_manager/data_manager_sortmerna_download.py data_manager/data_manager_sortmerna_download.xml data_manager_conf.xml tool-data/rRNA_databases.loc.sample tool_data_table_conf.xml.sample |
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| diff -r 765f4ec851f0 -r 30bb49887172 data_manager/data_manager_sortmerna_download.py --- a/data_manager/data_manager_sortmerna_download.py Wed May 31 14:53:00 2017 -0400 +++ b/data_manager/data_manager_sortmerna_download.py Tue Jun 06 13:40:27 2017 -0400 |
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| @@ -140,7 +140,6 @@ data_tables, "rRNA_databases", dict( - dbkey=db_name, value=version, name=db_name, path=output_filepath)) |
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| diff -r 765f4ec851f0 -r 30bb49887172 data_manager/data_manager_sortmerna_download.xml --- a/data_manager/data_manager_sortmerna_download.xml Wed May 31 14:53:00 2017 -0400 +++ b/data_manager/data_manager_sortmerna_download.xml Tue Jun 06 13:40:27 2017 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="data_manager_sortmerna_download" name="Download SortMeRNA" version="@VERSION@.0" tool_type="manage_data"> +<tool id="data_manager_sortmerna_download" name="Download SortMeRNA" version="@VERSION@.1" tool_type="manage_data"> <description>reference databases</description> <macros> <import>macros.xml</import> |
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| diff -r 765f4ec851f0 -r 30bb49887172 data_manager_conf.xml --- a/data_manager_conf.xml Wed May 31 14:53:00 2017 -0400 +++ b/data_manager_conf.xml Tue Jun 06 13:40:27 2017 -0400 |
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| @@ -5,13 +5,12 @@ <output> <!-- Handle the output of the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> - <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="path" output_ref="out_file" > <move type="file"> <source>${path}</source> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rRNA_databases/${dbkey}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rRNA_databases/${name}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rRNA_databases/${dbkey}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rRNA_databases/${name}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> |
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| diff -r 765f4ec851f0 -r 30bb49887172 tool-data/rRNA_databases.loc.sample --- a/tool-data/rRNA_databases.loc.sample Wed May 31 14:53:00 2017 -0400 +++ b/tool-data/rRNA_databases.loc.sample Tue Jun 06 13:40:27 2017 -0400 |
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| @@ -1,2 +1,2 @@ -#<unique_id> <database_caption> <name> <fasta_file_path> +#<unique_id> <database_caption> <fasta_file_path> |
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| diff -r 765f4ec851f0 -r 30bb49887172 tool_data_table_conf.xml.sample --- a/tool_data_table_conf.xml.sample Wed May 31 14:53:00 2017 -0400 +++ b/tool_data_table_conf.xml.sample Tue Jun 06 13:40:27 2017 -0400 |
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| @@ -1,6 +1,6 @@ <tables> <table name="rRNA_databases" comment_char="#"> - <columns>value, name, dbkey, path</columns> + <columns>value, name, path</columns> <file path="tool-data/rRNA_databases.loc" /> </table> </tables> \ No newline at end of file |