| Previous changeset 3:9704f1a3b32d (2021-02-01) Next changeset 5:cad93abecac9 (2021-03-28) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann2 commit 55eb503f50c54695ec36c3d4671c2b3e64d05f40" |
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modified:
humann2_macros.xml humann2_unpack_pathways.xml |
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| diff -r 9704f1a3b32d -r 3115a530686e humann2_macros.xml --- a/humann2_macros.xml Mon Feb 01 18:22:12 2021 +0000 +++ b/humann2_macros.xml Fri Feb 05 18:23:16 2021 +0000 |
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| @@ -7,6 +7,13 @@ <yield/> </requirements> </xml> + + <xml name="stdio"> + <stdio> + <regex match="Failed to allocate sufficient memory." source="stderr" level="fatal_oom" description="Out of memory error occurred" /> + <regex match="MemoryError" source="stderr" level="fatal_oom" description="Out of memory error occurred" /> + </stdio> + </xml> <xml name="version"> <version_command>humann2 --version</version_command> </xml> |
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| diff -r 9704f1a3b32d -r 3115a530686e humann2_unpack_pathways.xml --- a/humann2_unpack_pathways.xml Mon Feb 01 18:22:12 2021 +0000 +++ b/humann2_unpack_pathways.xml Fri Feb 05 18:23:16 2021 +0000 |
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| @@ -1,8 +1,9 @@ -<tool id="humann2_unpack_pathways" name="Unpack pathway abundances to show genes included" version="@WRAPPER_VERSION@.0"> +<tool id="humann2_unpack_pathways" name="Unpack pathway abundances to show genes included" version="@WRAPPER_VERSION@.1"> <description></description> <macros> <import>humann2_macros.xml</import> </macros> + <expand macro="stdio"/> <expand macro="requirements"/> <expand macro="version"/> <command detect_errors="exit_code"><![CDATA[ |