| Next changeset 1:4d3e3d7aa0c4 (2020-06-23) |
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Commit message:
"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 90a172f1fc12b9c4d73f4c924a8c0c5a559589d0" |
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added:
snv_matrix.xml test-data/snvalign-13.phy test-data/snvalign-13.phy.out |
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| diff -r 000000000000 -r 317ba2ee501d snv_matrix.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/snv_matrix.xml Tue Aug 27 12:33:00 2019 -0400 |
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| @@ -0,0 +1,39 @@ +<tool id="snvmatrix" name="SNV Matrix" version ="1.8.2"> + <description>Create SNV matrix from Phylip file</description> + <requirements> + <requirement type="package" version="1.8.2">snvphyl-tools</requirement> + </requirements> + <command detect_errors="exit_code"> + snv_matrix.pl $phylip + -o $out + </command> + <inputs> + <param name="phylip" type="data" label="Phylip file" format="phylip"/> + </inputs> + <outputs> + <data format="tabular" name="out"/> + </outputs> + <tests> + <test> + <param name="phylip" value="snvalign-13.phy"/> + <output name="out" file="snvalign-13.phy.out"/> + </test> + </tests> + + <help> +What it does +============ + +Create SNV matrix from Phylip file format + + +Usage +===== + +**Parameters** + - Phylip file: Phylogenetic file (.ph, .phy) + + </help> +<citations> +</citations> +</tool> |
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| diff -r 000000000000 -r 317ba2ee501d test-data/snvalign-13.phy --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/snvalign-13.phy Tue Aug 27 12:33:00 2019 -0400 |
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| @@ -0,0 +1,6 @@ + 5 3 +'a' AAY +'b' AAA +'c' AAA +'d' TAA +'e' NGG |
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| diff -r 000000000000 -r 317ba2ee501d test-data/snvalign-13.phy.out --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/snvalign-13.phy.out Tue Aug 27 12:33:00 2019 -0400 |
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| @@ -0,0 +1,6 @@ +strain a e b c d +a 0 1 0 0 0 +e 1 0 1 1 1 +b 0 1 0 0 0 +c 0 1 0 0 0 +d 0 1 0 0 0 |