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Changeset 2:321cad0eb507 (2021-03-16)

Previous changeset 1:ea8fde9c6f82 (2019-10-09) Next changeset 3:c282a8a47dd9 (2021-05-21)

Commit message:
"planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/cherry_pick_fasta commit b5ef783237b244d684e26b1ed1cc333a8305ce3e"

modified:
cherry_pick_fasta.py
cherry_pick_fasta.xml
test-data/output_termlist.fa
test-data/output_termlist_without.fa
test-data/output_without.fa

diff -r ea8fde9c6f82 -r 321cad0eb507 cherry_pick_fasta.py
--- a/cherry_pick_fasta.py Wed Oct 09 18:48:17 2019 -0400
+++ b/cherry_pick_fasta.py Tue Mar 16 23:25:57 2021 +0000

@@ -45,7 +45,7 @@

def complement_fasta(fullfasta, subfasta):
- return list(set(fullfasta) - set(subfasta))
+ return sorted(list(set(fullfasta) - set(subfasta)))

def getquerylist(file):

diff -r ea8fde9c6f82 -r 321cad0eb507 cherry_pick_fasta.xml
--- a/cherry_pick_fasta.xml Wed Oct 09 18:48:17 2019 -0400
+++ b/cherry_pick_fasta.xml Tue Mar 16 23:25:57 2021 +0000

@@ -1,5 +1,8 @@
-<tool id="cherry_pick_fasta" name="Pick Fasta sequences" version="2.0.0">
+<tool id="cherry_pick_fasta" name="Pick Fasta sequences" version="2.1.0">
   <description>with header satisfying a string query</description>
+  <requirements>
+      <requirement type="package" version="3.7.6">python</requirement>
+  </requirements>
   <command interpreter="python">cherry_pick_fasta.py
                                    --input $input
                                    --searchfor '$search.searchfor'

diff -r ea8fde9c6f82 -r 321cad0eb507 test-data/output_termlist.fa
--- a/test-data/output_termlist.fa Wed Oct 09 18:48:17 2019 -0400
+++ b/test-data/output_termlist.fa Tue Mar 16 23:25:57 2021 +0000

b'@@ -1,117 +1,4 @@\n->gi|157065140|gb|ABV04399.1|_p3__Heliothis_armigera_cypovirus_5--Locus_27_Transcript_6/7_Confidence_0.333_Length_1626_hit1_IdMatch=24.9,AligLength=494,E-val=2e-33\n-CTCCTCGCTCATGTCAAGAACTTCTATCTATTATGGATGACCTAATTGTGCGTATTAGAG\n-ATACCGAGGGCTTGAAGATGATGATCTTCTCGTTTGCTATACATTGCATTAATAGTATTG\n-TATTAAACATTGCGAAAGTTGATCTTGCCGCTATAATATCGAAATTGACTTCAAATAATT\n-TGCGTACATATGTATATCCTACGAAAGATGAACATGCTTTTCAGCTCGTTAGATTGTATT\n-TTCCATTGATGTGGTTCTTTATGCATAAAGGTGGTGAATTACCAGCTTATCCAATTGAAC\n-GGGTTGATGGTACTTATACAGATGACGAGTCGGTGTACACTGTGCGAGGTGAATACAAAC\n-GAAGATTGATGTTTGATATTATAGGTATTGATAAAATTGAGAAATTTGGTGACGCCATTT\n-TCAGAAATAATCACTGCTTTGATATCGGTTTGAACGCTGCTGATGCCATCATTAAGCTGA\n-AGATAACGGATCTACCGAAGGAAATGAGAAGTGAAACGCTCGAGCATGGTATCATATCAA\n-ATCTAGCGAAAAATTTAGAGTCATTCGGCAATGCTATGTCTAAGGAAGCTTCACTTCAAG\n-CGAAACTCAGGATTGAAAATGAACTTGCAGGTGTTAGGAGCGTAACTCAGACAAATGAAG\n-TTGTCGTTGGAAGAGGAAAGATAGCAAAAGTCCCAAAAAGTATTGTATACGCACATCGAA\n-CTGAAGCACAACTTGAACAGATATTAATGACAAGAGAGTCGGATAATGAAGAGCGACCAA\n-TGATATCAAAGCGAATGCTTGATCACATCGCTTCACTATCGTTTCATCATGTTGTTAATG\n-TCAAGACAACGGATAAGTTACACTTGTATTACTTCTATCCTAGTGGCGATGCCCTAGTTT\n-ACGGTAATCATGCAAAATACACTGAACATTTCGAATTAGCTCCACCTATGTGGTATTTGT\n-CACCTTCATGGCGTTTATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACTTAC\n-TTCGACAAATTAATTGGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGAAGA\n-TCCGTTATGGATATGATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACATGA\n-CAATGATCGGAGCATCACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGATGG\n-ATAGATGGGGTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCT\n-CAGACAATCCATTAGTCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAA\n-CTAGGCCCTTACAGGTAATTGTCGGCTATCTACATATACTTGCGCATATTAATACGATTT\n-TTACACGACCACAAGTAAAGTTAACTGAGCATCTTATTGAATATATGCATCAGCGAGCTG\n-TACATACAGGAAGGTCG\n->gi|584614105|gb|AHJ14783.1|_VP3__Orgyia_pseudotsugata_cypovirus_5--Locus_27_Transcript_1/7_Confidence_0.444_Length_3872_hit1_IdMatch=28.76,AligLength=1217,E-val=4e-139\n-GTGGTATAGCTCTCAGCGCTACGGTTATAGTACCTCAGAGTATTTTGAAGCCACCACCTT\n-TCAACGAGAAAGACTGGCCTTTGAATGAAGACGAGAGTATGTTCAGTGCCTCGCGCAAGT\n-ATAATTACATGATAAATACTAGTACGTTGAGCCTTTATGGTTCGAGGGAAAGTTTAGTCG\n-GTAAAGCAATATACGGTTTATATACTGATGAGCAATCACAGTCACGCTTCAGGACAGTAT\n-GGCATCAAATAATGGCAAGTGTCTACGCACTAGACGATTATCTAGGTCATACTAACCATC\n-CAGTTCGTGCAGTGTTGGCACAGTTAAACTTAGACAAAGGATTACCATTCAAGGAAACTG\n-CTGAAGGTATTGACTTAACAGAGGCGGTTGAAAAAGGAATTGATTCGAGTACATTACTAC\n-CATCAATATTATATATGTTGATCTCAGTATCGTGCGATATCTGTTTCGGAATTTCAACTG\n-AAGTTGAAGGTGCCTTTACGATCAATCATTATCTTAATCTAGCACAGCATGATTACGCGG\n-ATGAGAAGTTACGAATTAAGTCGGCATGTCGTAATTGGTTTGCACAAGCATTGAGTAAAC\n-TAGACGTCATAGCTTACCCAGTTTATAACAATCAGCTCGAGATCATCGACCTAAAGTATG\n-TACATGGTAAAGAGCCAAAGTATGTAAGCACATTACATGAAAAAGTTGCCGAATCACGTC\n-AACGTAAGCTGTCAAAATACCCATACTTACTGGAATATATTGATAGGTCACGTAAAGCGA\n-AAACGGTGGAGGAATTAATCCATAGACTTTTAGTGATGAATGCACTTTCAAACGACCGCT\n-CTTTCTATAAAACACGGACGGAATTATCATTAGACGCGGCGGTAAAATCAGAGGTGCGAG\n-AGCACTTAGTTAGTGCTCCGGTCGCTAAATTGATTGACCCTCAGTCTAATCGAATCTATC\n-AGAAGTACTTTATTAGAGAAAGGAATGAAGCAATGTACTATGCTCAACAGTACTTATTAA\n-GCTTTGTCCCAGCATTGATCCAACAACTGAGCAAAACCAACTTTGATGAGGAATGGTTAC\n-GATTTTTAACCACATCTTCACCTGGAGTCAAATTACCTCAAGAAACGCTAGACAGCCTGA\n-GTAAAACATCTGCAGTATTATCGAAATCAAGACGAGGTTTGGAAGCGCTTGAAGCATCTG\n-AATATAGAAGCATCAATCGTGTTGAACGAGCGTTAGAGATGGTACTCAAATTAGTTCAAA\n-GACAACAAAATGATAGAAGACAACGAGCGATAGCAGGCGAACCAAATTCCATTCTATTAC\n-TGACCCTTGTTTATTATGTTATCTTATCGGCTATGTACGCCATGTCGACAGATGCAGCTC\n-AAGGTAAACAGGTTGGTAATTCAATGGACCTTCAAGACTTGTTATTCGCGACAACTCAGA\n-CGGACACGCTTGTGTCATCAATTGATATTGTAGGTATGGATGCTTCTGTGCAGTCAATAA\n-CTACTGAGTTGTCAAATATTATCTGTCTTGAAGTGACGCGTGGTTTACCTGAATCACAAA\n-TTGGACCATTTACAGGCGGTATGAAGCGTCTTCTGCAACTAAGTGATGAACCTGGTGGAG\n-CGTGGAAGCAGGTTGAGATGTATGTATCAGGTACACTTGAGGCCGTGGTATTCGAAGGTA\n-GTCATGCACTAACATCAACTACTTACGAGAGTAAGATTTTTGGAAGTGTTAAGAACTATG\n-CGGGTACGTATCCCTCAGGTAGAGCTGACACGTCGTCACATCACACTAAGGTTTTGGAAG\n-GTGCGACCCGTGGTAATGAAATGCGAAGAAGAACGGATGAGCGAATCGTGCACCATGCGT\n-CGACGATTGTAATGTCACGTAATATGGGTGATGATAAGTCAGACGTATACACAGGATCAT\n-TTCCAAATGTTATATCACAATTAGTGAGCGATAAAGATGTACTCGCACAATTGGGTTTTA\n-AGACAGATGCAGATCTCTCGAGTCACAACGGAGAATTCTTGCAACAACATGTATGTAGAG\n-GAAGGCTAGTCGGAAAACCATCACGTATATC'..b'AATTAGCTCCACCTATGTGGTATTTGTCACCTTCATGGC\n+GTTTATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACTTACTTCGACAAATTA\n+ATTGGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGAAGATCCGTTATGGAT\n+ATGATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACATGACAATGATCGGAG\n+CATCACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGATGGATAGATGGGGTA\n+CTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCTCAGACAATCCAT\n+TAGTCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAACTAGGCCCTTAC\n+AGGTAATTGTCGGCTATCTACATATACTTGCGCATATTAATACG\n+>gi|8895507|gb|AAF80998.1|_nonstructural_polyprotein__cricket_paralysis_virus--Locus_50_Transcript_1/1_Confidence_0.000_Length_1442_hit1_IdMatch=24.95,AligLength=537,E-val=8e-47\n+GAATTCGTGCGCATGCAAAGAATAAATGACCACCCTTCGGGTTGGAAAGCTACGGATGAA\n+GTATATGGCTATGCAGAGTTCTCGAAACTAATGTGTGCTGAATGGAAGAGAAGGAAGACA\n+GAACATCAGAATACTGTTGACTTCCTTAAGAAGTATGCAGAGCGACCCTTCGAGACCAAC\n+CCCGGACCAGTGGAGGATATCCCAATAAGACACGATGATGTCGAGCAGGGGGTAGAAGCG\n+CAGATGGGTCGAGATGCAGATTGGTTTAACAATGACATAGCGGAACGTATAGCGCGTGGA\n+CAGGATATTACTGATATCTTGTATGAGTATGCTGAAGATGACGAGTTGCATGAGGATTAC\n+ATGGCTTACAAGAAACAGCAGGCCCAGCCTAGTAAGTGGGACAAATACGCGCGCCGTCTC\n+GAAAGTGCAATTACGGAAGGAAAGAATTTCCTTGCCCGTGTGGTTTCAAAAATAGCCAGC\n+GTCATTCGGGAGAACCCATATTTGACCATGATGGCAACTGTGGGGAGCGTTCTCGCTCTG\n+TATGGAGCTATGCGTTGGTTTTCGAAAGGAGTAACGGAGACTTTTGACGCTGAAGAAGTT\n+ACTATTCCCAACGAAACCAAGGTAGAGAACGTTGTGCGTACGGAGGGTTTTGAATCTTAC\n+GACCATCGGACTCCGCGCGCTCATCGAGCCAACAGGCAATATGTGCGAGCTGAGGCGATG\n+ATAGATGAAACAGGGTACCTGGTAGCCAACAACAAAGTCACTGGCAACACGTATCGAATG\n+TGTATCAAGAGGGATCCTGATGATTTGGTCGTTGGAAACGCTGTGTTTATCACAGGGTGG\n+ACGCTCCTCATACCGTACCACTTCGTTTGTGGACTGGCGGGACGGAGAATAGCTGCTGAT\n+TCCATCGTGACTTTGTCAAAGCCAGGCTTGGATAAGATTATTGAATTCCCGTTGTCACGA\n+ATCTTCCGATACGATACCTCACCAGATGGTTTTACCACTAGTGAGTATTGTGCTCGAATG\n+GAACATGAAGATGGAGAATTGGTTGATGCCATCCTGGTAAACCTGCATGGTTTGGGAGTG\n+CGAATCCATCCTGACCTCCGGGGAAAAATTGTGACGGTACGAGACCAAGCGCACCTGAGT\n+ACGACATTTCATGCGATTCTCACAACGATGTCCAGGAAGCCACCACTAACAACGTCACAA\n+CAAGTGGTAAAAGGGGTCAAGCCAATGGATAAAATCCTGCACATCAATTTACCAGTTGGG\n+GACAAAACAACGCAATACACCCAACGTGACTGTTACAAGTATTATTCCGTAACGGTCGTT\n+GGAGATTGTGGTGCCTTGCTGGTAGCACAAAATCATGCAATTGTGAGGAAAATATTTGCA\n+ATGCATATAGCAGGTGCGGAAGAAAATGGCTATGCTTGTCCAATCAATCAGGAAATGTTA\n+G\n+>gi|9629651|ref|NP_044945.1|_replicase_polyprotein__Drosophila_C_virus--Locus_50_Transcript_1/1_Confidence_0.000_Length_1442_hit1_IdMatch=35.5,AligLength=231,E-val=2e-37\n+AACACGTATCGAATGTGTATCAAGAGGGATCCTGATGATTTGGTCGTTGGAAACGCTGTG\n+TTTATCACAGGGTGGACGCTCCTCATACCGTACCACTTCGTTTGTGGACTGGCGGGACGG\n+AGAATAGCTGCTGATTCCATCGTGACTTTGTCAAAGCCAGGCTTGGATAAGATTATTGAA\n+TTCCCGTTGTCACGAATCTTCCGATACGATACCTCACCAGATGGTTTTACCACTAGTGAG\n+TATTGTGCTCGAATGGAACATGAAGATGGAGAATTGGTTGATGCCATCCTGGTAAACCTG\n+CATGGTTTGGGAGTGCGAATCCATCCTGACCTCCGGGGAAAAATTGTGACGGTACGAGAC\n+CAAGCGCACCTGAGTACGACATTTCATGCGATTCTCACAACGATGTCCAGGAAGCCACCA\n+CTAACAACGTCACAACAAGTGGTAAAAGGGGTCAAGCCAATGGATAAAATCCTGCACATC\n+AATTTACCAGTTGGGGACAAAACAACGCAATACACCCAACGTGACTGTTACAAGTATTAT\n+TCCGTAACGGTCGTTGGAGATTGTGGTGCCTTGCTGGTAGCACAAAATCATGCAATTGTG\n+AGGAAAATATTTGCAATGCATATAGCAGGTGCGGAAGAAAATGGCTATGCTTGTCCAATC\n+AATCAGGAAATGTTAG\n+>gi|9629651|ref|NP_044945.1|_replicase_polyprotein__Drosophila_C_virus--Locus_50_Transcript_1/1_Confidence_0.000_Length_1442_hit2_IdMatch=27.44,AligLength=277,E-val=3e-21\n+GAATTCGTGCGCATGCAAAGAATAAATGACCACCCTTCGGGTTGGAAAGCTACGGATGAA\n+GTATATGGCTATGCAGAGTTCTCGAAACTAATGTGTGCTGAATGGAAGAGAAGGAAGACA\n+GAACATCAGAATACTGTTGACTTCCTTAAGAAGTATGCAGAGCGACCCTTCGAGACCAAC\n+CCCGGACCAGTGGAGGATATCCCAATAAGACACGATGATGTCGAGCAGGGGGTAGAAGCG\n+CAGATGGGTCGAGATGCAGATTGGTTTAACAATGACATAGCGGAACGTATAGCGCGTGGA\n+CAGGATATTACTGATATCTTGTATGAGTATGCTGAAGATGACGAGTTGCATGAGGATTAC\n+ATGGCTTACAAGAAACAGCAGGCCCAGCCTAGTAAGTGGGACAAATACGCGCGCCGTCTC\n+GAAAGTGCAATTACGGAAGGAAAGAATTTCCTTGCCCGTGTGGTTTCAAAAATAGCCAGC\n+GTCATTCGGGAGAACCCATATTTGACCATGATGGCAACTGTGGGGAGCGTTCTCGCTCTG\n+TATGGAGCTATGCGTTGGTTTTCGAAAGGAGTAACGGAGACTTTTGACGCTGAAGAAGTT\n+ACTATTCCCAACGAAACCAAGGTAGAGAACGTTGTGCGTACGGAGGGTTTTGAATCTTAC\n+GACCATCGGACTCCGCGCGCTCATCGAGCCAACAGGCAATATGTGCGAGCTGAGGCGATG\n+ATAGATGAAACAGGGTACCTGGTAGCCAACAACAAAGTCACTGGCAACACGTATCGAATG\n+TGTATCAAGAGGGATCCTGA\n'

diff -r ea8fde9c6f82 -r 321cad0eb507 test-data/output_termlist_without.fa
--- a/test-data/output_termlist_without.fa Wed Oct 09 18:48:17 2019 -0400
+++ b/test-data/output_termlist_without.fa Tue Mar 16 23:25:57 2021 +0000

diff -r ea8fde9c6f82 -r 321cad0eb507 test-data/output_without.fa
--- a/test-data/output_without.fa Wed Oct 09 18:48:17 2019 -0400
+++ b/test-data/output_without.fa Tue Mar 16 23:25:57 2021 +0000

b'@@ -1,30 +1,4 @@\n->gi|157065140|gb|ABV04399.1|_p3__Heliothis_armigera_cypovirus_5--Locus_27_Transcript_6/7_Confidence_0.333_Length_1626_hit1_IdMatch=24.9,AligLength=494,E-val=2e-33\n-CTCCTCGCTCATGTCAAGAACTTCTATCTATTATGGATGACCTAATTGTGCGTATTAGAG\n-ATACCGAGGGCTTGAAGATGATGATCTTCTCGTTTGCTATACATTGCATTAATAGTATTG\n-TATTAAACATTGCGAAAGTTGATCTTGCCGCTATAATATCGAAATTGACTTCAAATAATT\n-TGCGTACATATGTATATCCTACGAAAGATGAACATGCTTTTCAGCTCGTTAGATTGTATT\n-TTCCATTGATGTGGTTCTTTATGCATAAAGGTGGTGAATTACCAGCTTATCCAATTGAAC\n-GGGTTGATGGTACTTATACAGATGACGAGTCGGTGTACACTGTGCGAGGTGAATACAAAC\n-GAAGATTGATGTTTGATATTATAGGTATTGATAAAATTGAGAAATTTGGTGACGCCATTT\n-TCAGAAATAATCACTGCTTTGATATCGGTTTGAACGCTGCTGATGCCATCATTAAGCTGA\n-AGATAACGGATCTACCGAAGGAAATGAGAAGTGAAACGCTCGAGCATGGTATCATATCAA\n-ATCTAGCGAAAAATTTAGAGTCATTCGGCAATGCTATGTCTAAGGAAGCTTCACTTCAAG\n-CGAAACTCAGGATTGAAAATGAACTTGCAGGTGTTAGGAGCGTAACTCAGACAAATGAAG\n-TTGTCGTTGGAAGAGGAAAGATAGCAAAAGTCCCAAAAAGTATTGTATACGCACATCGAA\n-CTGAAGCACAACTTGAACAGATATTAATGACAAGAGAGTCGGATAATGAAGAGCGACCAA\n-TGATATCAAAGCGAATGCTTGATCACATCGCTTCACTATCGTTTCATCATGTTGTTAATG\n-TCAAGACAACGGATAAGTTACACTTGTATTACTTCTATCCTAGTGGCGATGCCCTAGTTT\n-ACGGTAATCATGCAAAATACACTGAACATTTCGAATTAGCTCCACCTATGTGGTATTTGT\n-CACCTTCATGGCGTTTATATGGCCTATTAGGTACAGCGTCACAGACACGTGGTGACTTAC\n-TTCGACAAATTAATTGGCTAAAAGGTAAATATGGAACGTTTAAGCTTGATGACGAGAAGA\n-TCCGTTATGGATATGATGTTATCTGGCGAAAGAACAGACATCTGCTTAATGACTACATGA\n-CAATGATCGGAGCATCACCACATCTTGAAAACTTGCTTAAGAGCATCTTTCGTTTGATGG\n-ATAGATGGGGTACTTATCGTTATGATTACATTCAAACACCGAGGAATATTTTCTTTATCT\n-CAGACAATCCATTAGTCGCTGAACAGAACATTATCTTCGCTGCAGATGGTGACGAGATAA\n-CTAGGCCCTTACAGGTAATTGTCGGCTATCTACATATACTTGCGCATATTAATACGATTT\n-TTACACGACCACAAGTAAAGTTAACTGAGCATCTTATTGAATATATGCATCAGCGAGCTG\n-TACATACAGGAAGGTCG\n->gi|584614105|gb|AHJ14783.1|_VP3__Orgyia_pseudotsugata_cypovirus_5--Locus_27_Transcript_1/7_Confidence_0.444_Length_3872_hit1_IdMatch=28.76,AligLength=1217,E-val=4e-139\n+>gi|157065140|gb|ABV04399.1|_p3__Heliothis_armigera_cypovirus_5--Locus_27_Transcript_1/7_Confidence_0.444_Length_3872_hit1_IdMatch=29.11,AligLength=1209,E-val=2e-140\n GTGGTATAGCTCTCAGCGCTACGGTTATAGTACCTCAGAGTATTTTGAAGCCACCACCTT\n TCAACGAGAAAGACTGGCCTTTGAATGAAGACGAGAGTATGTTCAGTGCCTCGCGCAAGT\n ATAATTACATGATAAATACTAGTACGTTGAGCCTTTATGGTTCGAGGGAAAGTTTAGTCG\n@@ -85,194 +59,6 @@\n ACGAGATAACTAGGCCCTTACAGGTAATTGTCGGCTATCTACATATACTTGCGCATATTA\n ATACGATTTTTACACGACCACAAGTAAAGTTAACTGAGCATCTTATTGAATATATGCATC\n AGCGAGCTGTACATACAGGAAGGTCG\n->gi|81971654|sp|Q9IJX4.1|POLN_CRPVC_RecName:_Full_Replicase_polyprotein;_Contains:_RecName:_Full_Pro--Locus_65_Transcript_1/2_Confidence_0.667_Length_1344_hit1_IdMatch=43.46,AligLength=451,E-val=2e-122\n-TAGATAAGGTTTGCTCATTTCTTGAGGATGCTTTACCAGGTATGGTCGAGCACGTTACGC\n-TCGTAGCACAAAATACATCCGCGTCAGCCAAGGTGTTATCTGACGAGTTGATCAAATCAA\n-TGCTTTGCATTGTTTTGATTTGCTTGTTGATTGAAACCAAGTTCTATAAGACCGCTTTCG\n-CGGTACTTATAGTGGTTGCTCTACGTGTTTTCGGGTACAGTGAGCAAATAATTGAGACAG\n-CTATGGACATGTATCGCGTAATTAGGGCTCCAAAGGCTCAAGGTAATATGGAAGATGTCG\n-TTTTCCATCCGTGGTTGAACACGTGTGGAAAGTTGATTTTCCTACTTATCGCTGTCCTGT\n-GTCTCAAGAAATTACCAGGAAAGAACGACGTAGACACTTTCATGCGCAGGCTCGACAGCT\n-TACCCAAAGCTGTTAAGGGTGCGACACAACTACATGAATGGGTGTCAAAATACTTCGATC\n-TCTCTTTGGATCACGTCAAGGCGATGATTGTTGGTAAATCTTGTGCCGAAATGAAGAAGG\n-CTGAATCATCAAGCGCCAAAGTTTTGGCTTGGGCCGCTAGAGTTCAAGATTTCGTCAGAT\n-TGGAACAACGAAGTAAAATCGATAGTGATATCGCTGTCGCCAACGAGGCTGAAGCCTTGT\n-ATCACACTGGATTGCAATTTGCAGGAGACACTCTGTTACCTCCAGAATTGCACAAGGTCG\n-TGAACAGTGCGCTAAGACCAGCCCGCGATATATATGAGTACGTCACCCGCTCCCCAATAA\n-AAGGAGGGAGTCGTAAGATGAGACCCTTGATGATTTGGCTAGCTGGCCAGTCAGGAATTG\n-GGAAAACCTCTATGGTGGATCCTCTATGTATCGATTTGCTTCGAGCAATGGGTTATGTGG\n-GACCTGAACATCTCCACTCGTTGGTGTATGGCCGCCAAGTTGAGACGGAGTACTGGGATG\n-GTTACAAAGCCCACAAGATAGTGATCTATGATGATGCTTTTCAGCTGAAAGATGATGCTG\n-TGAACAGGAATTTGGAGGTATTTGAGGTTATACGTTCTTGCAACACGTATCCTCAACACC\n-TTCATATGGCTTGTCTCTCGGATAAAAACACTTTTTCAGTAGCGGAAGTGTACATCTACA\n-CTACCAACGAAATGAATGTCAAACTTGAGTCGCTGACTCATGAACAAGCATTCTACAACC\n-GCATGAGTGAAAACGCGTTCACTGTGCGTCCAAAAGAGGCTTATCGTCTAGTCGAAGAAG\n-GATCAACCGGCAATAAGCAGTATCGTTTGGACAAAACGAAAACCAAAGGAGCTATCGATC\n-TCGATGTGTACGAATTCGTGCGC\n->gi|169313610|gb|ACA533'..b'CCTGGTAAACCTG\n-CATGGTTTGGGAGTGCGAATCCATCCTGACCTCCGGGGAAAAATTGTGACGGTACGAGAC\n-CAAGCGCACCTGAGTACGACATTTCATGCGATTCTCACAACGATGTCCAGGAAGCCACCA\n-CTAACAACGTCACAACAAGTGGTAAAAGGGGTCAAGCCAATGGATAAAATCCTGCACATC\n-AATTTACCAGTTGGGGACAAAACAACGCAATACACCCAACGTGACTGTTACAAGTATTAT\n-TCCGTAACGGTCGTTGGAGATTGTGGTGCCTTGCTGGTAGCACAAAATCATGCAATTGTG\n-AGGAAAATATTTGCAATGCATATAGCAGGTGCGGAAGAAAATGGCTATGCTTGTCCAATC\n-AATCAGGAAATGTTAG\n+>gi|9629651|ref|NP_044945.1|_replicase_polyprotein__Drosophila_C_virus--Locus_63_Transcript_2/2_Confidence_0.333_Length_343_hit1_IdMatch=54.37,AligLength=103,E-val=5e-27\n+TAGGACACGAATACACAGATGAAACGAAAACAGGCGAGGCTGCGCCCTATCGGACATTGG\n+AAGAAGTCCGTTTCCTTAAAAGAGGGTTCAGAATGGATCACCTCTTGTGTCGGTGGGTAG\n+CTCCTTTGAAGAAGGATGTCATCTACGAAATGCTTAATTGGACGCGCAAAGGGATTAACC\n+CAGATGATGTGACGATGATGATCATTGATACAGCATTTAGGGAGATCTCTTATCACGGAA\n+GGGAAGCTTTCGAGAAGCTGCGAGGGCAGATACTTGAGCAGCGGGATGTGTTGGTTGAAT\n+ATCCTCAA\n+>gi|9629651|ref|NP_044945.1|_replicase_polyprotein__Drosophila_C_virus--Locus_65_Transcript_1/2_Confidence_0.667_Length_1344_hit1_IdMatch=46.44,AligLength=450,E-val=8e-138\n+TAGATAAGGTTTGCTCATTTCTTGAGGATGCTTTACCAGGTATGGTCGAGCACGTTACGC\n+TCGTAGCACAAAATACATCCGCGTCAGCCAAGGTGTTATCTGACGAGTTGATCAAATCAA\n+TGCTTTGCATTGTTTTGATTTGCTTGTTGATTGAAACCAAGTTCTATAAGACCGCTTTCG\n+CGGTACTTATAGTGGTTGCTCTACGTGTTTTCGGGTACAGTGAGCAAATAATTGAGACAG\n+CTATGGACATGTATCGCGTAATTAGGGCTCCAAAGGCTCAAGGTAATATGGAAGATGTCG\n+TTTTCCATCCGTGGTTGAACACGTGTGGAAAGTTGATTTTCCTACTTATCGCTGTCCTGT\n+GTCTCAAGAAATTACCAGGAAAGAACGACGTAGACACTTTCATGCGCAGGCTCGACAGCT\n+TACCCAAAGCTGTTAAGGGTGCGACACAACTACATGAATGGGTGTCAAAATACTTCGATC\n+TCTCTTTGGATCACGTCAAGGCGATGATTGTTGGTAAATCTTGTGCCGAAATGAAGAAGG\n+CTGAATCATCAAGCGCCAAAGTTTTGGCTTGGGCCGCTAGAGTTCAAGATTTCGTCAGAT\n+TGGAACAACGAAGTAAAATCGATAGTGATATCGCTGTCGCCAACGAGGCTGAAGCCTTGT\n+ATCACACTGGATTGCAATTTGCAGGAGACACTCTGTTACCTCCAGAATTGCACAAGGTCG\n+TGAACAGTGCGCTAAGACCAGCCCGCGATATATATGAGTACGTCACCCGCTCCCCAATAA\n+AAGGAGGGAGTCGTAAGATGAGACCCTTGATGATTTGGCTAGCTGGCCAGTCAGGAATTG\n+GGAAAACCTCTATGGTGGATCCTCTATGTATCGATTTGCTTCGAGCAATGGGTTATGTGG\n+GACCTGAACATCTCCACTCGTTGGTGTATGGCCGCCAAGTTGAGACGGAGTACTGGGATG\n+GTTACAAAGCCCACAAGATAGTGATCTATGATGATGCTTTTCAGCTGAAAGATGATGCTG\n+TGAACAGGAATTTGGAGGTATTTGAGGTTATACGTTCTTGCAACACGTATCCTCAACACC\n+TTCATATGGCTTGTCTCTCGGATAAAAACACTTTTTCAGTAGCGGAAGTGTACATCTACA\n+CTACCAACGAAATGAATGTCAAACTTGAGTCGCTGACTCATGAACAAGCATTCTACAACC\n+GCATGAGTGAAAACGCGTTCACTGTGCGTCCAAAAGAGGCTTATCGTCTAGTCGAAGAAG\n+GATCAACCGGCAATAAGCAGTATCGTTTGGACAAAACGAAAACCAAAGGAGCTATCGATC\n+TCGATGTGTACGAATTCGTGCGC\n+>gi|9629651|ref|NP_044945.1|_replicase_polyprotein__Drosophila_C_virus--Locus_65_Transcript_2/2_Confidence_0.333_Length_1324_hit1_IdMatch=46.74,AligLength=445,E-val=1e-135\n+CTTGAGGATACTTTACCAGGTATGGTCGAGCACGTTACGCTCGTAGCACAAAATACATCC\n+GCGTCAGCCAAGGTGTTATCTGACGAGTTGATCAAATCAATGCTTTGCATTGTTTTGATT\n+TGCTTGTTGATTGAAACCAAGTTCTATAAGACCGCTTTCGCGGTACTTATAGTGGTTGCT\n+CTACGTGTTTTCGGGTACAGTGAGCAAATAATTGAGACAGCTATGGACATGTATCGCGTA\n+ATTAGGGCTCCAAAGGCTCAAGGTAATATGGAAGATGTCGTTTTCCATCCGTGGTTGAAC\n+ACGTGTGGAAAGTTGATTTTCCTACTTATCGCTGTCCTGTGTCTCAAGAAATTACCAGGA\n+AAGAACGACGTAGACACTTTCATGCGCAGGCTCGACAGCTTACCCAAAGCTGTTAAGGGT\n+GCGACACAACTACATGAATGGGTGTCAAAATACTTCGATCTCTCTTTGGATCACGTCAAG\n+GCGATGATTGTTGGTAAATCTTGTGCCGAAATGAAGAAGGCTGAATCATCAAGCGCCAAA\n+GTTTTGGCTTGGGCCGCTAGAGTTCAAGATTTCGTCAGATTGGAACAACGAAGTAAAATC\n+GATAGTGATATCGCTGTCGCCAACGAGGCTGAAGCCTTGTATCACACTGGATTGCAATTT\n+GCAGGAGACACTCTGTTACCTCCAGAATTGCACAAGGTCGTGAACAGTGCGCTAAGACCA\n+GCCCGCGATATATATGAGTACGTCACCCGCTCCCCAATAAAAGGAGGGAGTCGTAAGATG\n+AGACCCTTGATGATTTGGCTAGCTGGCCAGTCAGGAATTGGGAAAACCTCTATGGTGGAT\n+CCTCTATGTATCGATTTGCTTCGAGCAATGGGTTATGTGGGACCTGAACATCTCCACTCG\n+TTGGTGTATGGCCGCCAAGTTGAGACGGAGTACTGGGATGGTTACAAAGCCCACAAGATA\n+GTGATCTATGATGATGCTTTTCAGCTGAAAGATGATGCTGTGAACAGGAATTTGGAGGTA\n+TTTGAGGTTATACGTTCTTGCAACACGTATCCTCAACACCTTCATATGGCTTGTCTCTCG\n+GATAAAAACACTTTTTCAGTAGCGGAAGTGTACATCTACACTACCAACGAAATGAATGTC\n+AAACTTGAGTCGCTGACTCATGAACAAGCATTCTACAACCGCATGAGTGAAAACGCGTTC\n+ACTGTGCGTCCAAAAGAGGCTTATCGTCTAGTCGAAGAAGGATCAACCGGCAATAAGCAG\n+TATCGTTTGGACAAAACGAAAACCAAAGGAGCTATCGATCTCGATGTGTACGAATTCGTG\n+CGC\n'