| Previous changeset 5:ee4a90760848 (2022-12-18) |
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Commit message:
planemo upload for repository https://github.com/COMBAT-TB/tb_variant_filter commit 8ef8941514b1a99b5608c41c0b3caa2ea4b54ac1 |
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modified:
tb_variant_filter.xml |
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| diff -r ee4a90760848 -r 32f14a2723ec tb_variant_filter.xml --- a/tb_variant_filter.xml Sun Dec 18 17:39:30 2022 +0000 +++ b/tb_variant_filter.xml Mon Aug 14 09:47:13 2023 +0000 |
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| @@ -1,7 +1,7 @@ <tool id="tb_variant_filter" name="TB Variant Filter" version="@TOOL_VERSION@+galaxy0" profile="20.09"> <description>M. tuberculosis H37Rv VCF filter</description> <macros> - <token name="@TOOL_VERSION@">0.3.6</token> + <token name="@TOOL_VERSION@">0.4.0</token> </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">tb_variant_filter</requirement> @@ -148,7 +148,7 @@ 1. Filter by region. Mask out variants in certain regions. Region lists available as: 1. Refined Low Confidence (RLC) regions from `Marin et al 2022 <https://doi.org/10.1093/bioinformatics/btac023>`_ 2. Refined Low Confidence (RLC) and Low Mappability regions from `Marin et al 2022 <https://doi.org/10.1093/bioinformatics/btac023>`_ - 3. PE/PPE genes from `Fishbein et al 2015 <https://onlinelibrary.wiley.com/doi/full/10.1111/mmi.12981>`_ + 3. PE/PPE genes from `Fishbein et al 2015 <https://web.archive.org/web/20210929032252/https://onlinelibrary.wiley.com/doi/10.1111/mmi.12981>`_ 4. `TBProfiler <http://tbdr.lshtm.ac.uk/>`_ list of antibiotic resistant genes 5. `MTBseq <https://github.com/ngs-fzb/MTBseq_source>`_ list of antibiotic resistant genes 6. `UVP <https://github.com/CPTR-ReSeqTB/UVP>`_ list of repetitive loci in M. tuberculosis genome |