| Previous changeset 7:e32aac2299fb (2019-11-15) Next changeset 9:e4d0231d8595 (2020-01-27) |
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Commit message:
"planemo upload commit 5b41fad964a75dcdc794e90342144c3eccea16d7" |
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modified:
macros.xml snippy-core.xml snippy.xml |
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| diff -r e32aac2299fb -r 32f2211eeec3 macros.xml --- a/macros.xml Fri Nov 15 08:19:05 2019 -0500 +++ b/macros.xml Sun Dec 01 13:06:05 2019 -0500 |
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| @@ -2,6 +2,7 @@ <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">snippy</requirement> + <requirement type="package" version="1.32">tar</requirement> <yield /> </requirements> </xml> |
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| diff -r e32aac2299fb -r 32f2211eeec3 snippy-core.xml --- a/snippy-core.xml Fri Nov 15 08:19:05 2019 -0500 +++ b/snippy-core.xml Sun Dec 01 13:06:05 2019 -0500 |
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| @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="snippy_core" name="snippy-core" version="@VERSION@+galaxy0"> +<tool id="snippy_core" name="snippy-core" version="@VERSION@+galaxy1"> <description> Combine multiple Snippy outputs into a core SNP alignment </description> |
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| diff -r e32aac2299fb -r 32f2211eeec3 snippy.xml --- a/snippy.xml Fri Nov 15 08:19:05 2019 -0500 +++ b/snippy.xml Sun Dec 01 13:06:05 2019 -0500 |
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| @@ -1,4 +1,4 @@ -<tool id="snippy" name="snippy" version="@VERSION@+galaxy0"> +<tool id="snippy" name="snippy" version="@VERSION@+galaxy1"> <description> Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. </description> @@ -54,7 +54,7 @@ #end if mkdir -p ${dir_name} && cp -r out/reference out/snps.tab out/snps.aligned.fa out/snps.vcf ${dir_name}/ && - tar -cf - ${dir_name} | gzip > out.tgz + tar -czf out.tgz ${dir_name} #if "outcon" in str($outputs) and $adv.rename_cons && sed -i 's/>.*/>${dir_name}/' out/snps.consensus.fa #end if |