Previous changeset 1:08780101bc36 (2021-07-05) Next changeset 3:21beb30956c2 (2022-10-21) |
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/intervene commit bf6d77a84f796430a6b4530209d0f21e1d40d25a |
modified:
intervene_pairwise.xml intervene_upset.xml |
added:
test-data/matrix.txt |
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diff -r 08780101bc36 -r 33b8c5eedc04 intervene_pairwise.xml --- a/intervene_pairwise.xml Mon Jul 05 11:24:59 2021 +0000 +++ b/intervene_pairwise.xml Wed Aug 10 08:23:43 2022 +0000 |
[ |
@@ -1,5 +1,8 @@ -<tool id="intervene_pairwise" name="Pairwise intersection" version="@TOOL_VERSION@"> +<tool id="intervene_pairwise" name="Pairwise intersection" version="@TOOL_VERSION@+galaxy1"> <description>and heatmap for genomic intervals</description> + <xrefs> + <xref type="bio.tools">intervene</xref> + </xrefs> <macros> <import>macros.xml</import> </macros> @@ -68,6 +71,7 @@ <expand macro="quote_sanitizer"/> </param> <expand macro="figure_params"/> + <param name="out_matrix" type="boolean" truevalue="true" falsevalue="false" label="Output the intervene matrix file?"/> </inputs> <outputs> <data name="plot" format="pdf" label="Pairwise plot on ${on_string}" from_work_dir="results/Intervene_pairwise.plot"> @@ -77,11 +81,16 @@ </action> </actions> </data> + <data name="matrix" format="txt" label="Matrix on ${on_string}" from_work_dir="results/Intervene_pairwise_frac_matrix.txt"> + <filter>out_matrix</filter> + </data> </outputs> <tests> - <test> + <test expect_num_outputs="2"> <param name="input" value="a.bed,b.bed,c.bed"/> + <param name="out_matrix" value="true"/> <output name="plot" value="bed_pairwise.pdf" compare="sim_size"/> + <output name="matrix" value="matrix.txt" /> </test> </tests> <help><![CDATA[ |
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diff -r 08780101bc36 -r 33b8c5eedc04 intervene_upset.xml --- a/intervene_upset.xml Mon Jul 05 11:24:59 2021 +0000 +++ b/intervene_upset.xml Wed Aug 10 08:23:43 2022 +0000 |
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@@ -1,5 +1,8 @@ <tool id="intervene_upset" name="UpSet diagram" version="@TOOL_VERSION@"> <description>of intersection of genomic regions or list sets</description> + <xrefs> + <xref type="bio.tools">intervene</xref> + </xrefs> <macros> <import>macros.xml</import> </macros> |
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diff -r 08780101bc36 -r 33b8c5eedc04 test-data/matrix.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/matrix.txt Wed Aug 10 08:23:43 2022 +0000 |
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@@ -0,0 +1,4 @@ + a.bed b.bed c.bed +a.bed 1.0 0.75 0.875 +b.bed 1.0 1.0 0.8333333333333334 +c.bed 1.0 0.7142857142857143 1.0 |